| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is ydaD [H]
Identifier: 116625963
GI number: 116625963
Start: 8692300
End: 8693268
Strand: Reverse
Name: ydaD [H]
Synonym: Acid_6921
Alternate gene names: 116625963
Gene position: 8693268-8692300 (Counterclockwise)
Preceding gene: 116625964
Following gene: 116625962
Centisome position: 87.23
GC content: 58.82
Gene sequence:
>969_bases ATGGCATCGAAACAGGCCGAGCGCCGCCAACGTGCGATACAGGAACAGGTTGCCCGCGCTGACAAGAAGCGCCCAAAGAA GGAAAGCACTCAAGCTATGCAGGCCGGCGGCCGTCCCTATCCGGCGCCACCTTTTCCGCGCCAGCATCAGCCAAAGCCCG GTTCGGAAAAGACCCTCAACCCGCCCCCGCTTTACGACGTTCCTTTCTATCTGGGTTCGAAAAAACTGGCGGACAAAGTC GCACTGATCACCGGCGGCGACTCTGGAATCGGCCGCGCGGTAGCGATACTGTTCGCTCGGGAAGGAGCCGATATCGCACT CGCATATCTGAGCGAACATCAAGACGCAGCGATCACGAAGGAGAGGGTCGAAGCGGAAGGTAAAAGGTGTCTGCTGATCG CCGGAGATGTCCGCAGTCAAAAGTTTTGCGAAAAGGCGGTCGCGAGAACCGTGAAAGAATTCGGGCGTCTGGATGTGCTC GTGAACAACGCCGCCTTCCAGATCCACGTCTCGCAATTTGAGGATCTGACCGCGAAGCATTTCGACGAGACGCTCAAGAC CAACCTTTATGGCTATTTTTTTATGGCGCAGGCGGCCGTCAAGAAGATGAAGTCCGGTTCCGCCATCATAAATACCGGGT CCGTCACGGGCCTGCTGGGCAGCGAATCGCTACTCGACTATTCCATGACCAAAGGCGGCATTCATGCTTTTACGCGGTCC CTTGCCTCGCATCTGGTGCCGCGCGGCATCCGAGTCAACGCTGTCGCGCCCGGGCCGGTGTGGACGCCTTTGAACCCTTC CGACAAGGAGGCCGCGAATGTGAGCAAGTTTGGAGCTGATACGCCGATGAAGCGGCCCGCGCAGCCCGAGGAGATCGCTC CTGCCTACGTCTTTCTAGCGTCGCCGCATTGTTCGAGCTACATCACGGGCGAAATCCTGCCCATCATCGGCGGTTACAGC GGCGGCTGA
Upstream 100 bases:
>100_bases GTGCGTCGGCCGACCGCAATCAACCCTCCCTAACGCTAGACACGAAATTGCCTCAAGCTTTCTGCCTGACACGGTTCGTT CGGATTCGCGAGGAGGAATG
Downstream 100 bases:
>100_bases AATGGCTTTCGGAGAATTCAGGCGGAAGCGCGACTTCGTTCCGCAATGACCTCGTCTCCACCGCCGCTGCGGATGAAGGC GTGCCGGTTCAAAGGCGCGA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: GSP39 [H]
Number of amino acids: Translated: 322; Mature: 321
Protein sequence:
>322_residues MASKQAERRQRAIQEQVARADKKRPKKESTQAMQAGGRPYPAPPFPRQHQPKPGSEKTLNPPPLYDVPFYLGSKKLADKV ALITGGDSGIGRAVAILFAREGADIALAYLSEHQDAAITKERVEAEGKRCLLIAGDVRSQKFCEKAVARTVKEFGRLDVL VNNAAFQIHVSQFEDLTAKHFDETLKTNLYGYFFMAQAAVKKMKSGSAIINTGSVTGLLGSESLLDYSMTKGGIHAFTRS LASHLVPRGIRVNAVAPGPVWTPLNPSDKEAANVSKFGADTPMKRPAQPEEIAPAYVFLASPHCSSYITGEILPIIGGYS GG
Sequences:
>Translated_322_residues MASKQAERRQRAIQEQVARADKKRPKKESTQAMQAGGRPYPAPPFPRQHQPKPGSEKTLNPPPLYDVPFYLGSKKLADKV ALITGGDSGIGRAVAILFAREGADIALAYLSEHQDAAITKERVEAEGKRCLLIAGDVRSQKFCEKAVARTVKEFGRLDVL VNNAAFQIHVSQFEDLTAKHFDETLKTNLYGYFFMAQAAVKKMKSGSAIINTGSVTGLLGSESLLDYSMTKGGIHAFTRS LASHLVPRGIRVNAVAPGPVWTPLNPSDKEAANVSKFGADTPMKRPAQPEEIAPAYVFLASPHCSSYITGEILPIIGGYS GG >Mature_321_residues ASKQAERRQRAIQEQVARADKKRPKKESTQAMQAGGRPYPAPPFPRQHQPKPGSEKTLNPPPLYDVPFYLGSKKLADKVA LITGGDSGIGRAVAILFAREGADIALAYLSEHQDAAITKERVEAEGKRCLLIAGDVRSQKFCEKAVARTVKEFGRLDVLV NNAAFQIHVSQFEDLTAKHFDETLKTNLYGYFFMAQAAVKKMKSGSAIINTGSVTGLLGSESLLDYSMTKGGIHAFTRSL ASHLVPRGIRVNAVAPGPVWTPLNPSDKEAANVSKFGADTPMKRPAQPEEIAPAYVFLASPHCSSYITGEILPIIGGYSG G
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=33.6032388663968, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=34.8178137651822, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI59889578, Length=229, Percent_Identity=31.8777292576419, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=32.1428571428571, Blast_Score=105, Evalue=8e-23, Organism=Homo sapiens, GI19923817, Length=263, Percent_Identity=29.6577946768061, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI15277342, Length=270, Percent_Identity=29.6296296296296, Blast_Score=98, Evalue=1e-20, Organism=Homo sapiens, GI31542939, Length=209, Percent_Identity=33.4928229665072, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4758504, Length=204, Percent_Identity=34.3137254901961, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI66933014, Length=259, Percent_Identity=34.7490347490347, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI5031737, Length=247, Percent_Identity=28.3400809716599, Blast_Score=83, Evalue=4e-16, Organism=Homo sapiens, GI4504505, Length=251, Percent_Identity=27.4900398406374, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI83715985, Length=184, Percent_Identity=32.0652173913043, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=27.7777777777778, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=29.5698924731183, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=27.8225806451613, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=33.7209302325581, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI40254986, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI33667109, Length=188, Percent_Identity=28.7234042553192, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI4503817, Length=192, Percent_Identity=27.6041666666667, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1789378, Length=276, Percent_Identity=42.3913043478261, Blast_Score=228, Evalue=4e-61, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=34.9206349206349, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=34.2412451361868, Blast_Score=123, Evalue=2e-29, Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=35.2459016393443, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789208, Length=256, Percent_Identity=32.03125, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI87082160, Length=255, Percent_Identity=31.7647058823529, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1788459, Length=248, Percent_Identity=31.8548387096774, Blast_Score=109, Evalue=3e-25, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=30.5785123966942, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=29.2682926829268, Blast_Score=98, Evalue=9e-22, Organism=Escherichia coli, GI1787905, Length=260, Percent_Identity=27.3076923076923, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789057, Length=258, Percent_Identity=29.0697674418605, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1787526, Length=229, Percent_Identity=25.3275109170306, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1786812, Length=255, Percent_Identity=26.2745098039216, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787820, Length=251, Percent_Identity=23.5059760956175, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787545, Length=256, Percent_Identity=25.78125, Blast_Score=65, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=35.1851851851852, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=34.9809885931559, Blast_Score=124, Evalue=6e-29, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=34.469696969697, Blast_Score=124, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=33.8403041825095, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI25147288, Length=252, Percent_Identity=33.7301587301587, Blast_Score=117, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=33.0798479087452, Blast_Score=112, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17560220, Length=275, Percent_Identity=34.1818181818182, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=31.6793893129771, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=31.9548872180451, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=32.0754716981132, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=31.2, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=30, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=30.7407407407407, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=32.9588014981273, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17555706, Length=262, Percent_Identity=34.7328244274809, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=29.8449612403101, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=31.2741312741313, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=28.3524904214559, Blast_Score=98, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17560676, Length=258, Percent_Identity=30.2325581395349, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=29.6703296703297, Blast_Score=95, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17536025, Length=266, Percent_Identity=28.9473684210526, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=28.9473684210526, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=27.7992277992278, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=28, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=29.1666666666667, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=28.4046692607004, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538182, Length=201, Percent_Identity=32.3383084577114, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=28.740157480315, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71982365, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=29.5275590551181, Blast_Score=70, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=258, Percent_Identity=28.2945736434109, Blast_Score=86, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6324126, Length=245, Percent_Identity=29.7959183673469, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=253, Percent_Identity=24.5059288537549, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=33.6, Blast_Score=126, Evalue=2e-29, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=34.136546184739, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI21357041, Length=249, Percent_Identity=32.1285140562249, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI28571526, Length=247, Percent_Identity=31.5789473684211, Blast_Score=114, Evalue=9e-26, Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=32.5396825396825, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=31.3725490196078, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=33.6, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24643142, Length=247, Percent_Identity=31.1740890688259, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI17737361, Length=202, Percent_Identity=30.1980198019802, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21355631, Length=191, Percent_Identity=33.5078534031414, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21357673, Length=199, Percent_Identity=26.6331658291457, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI28571387, Length=247, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI18859837, Length=243, Percent_Identity=24.6913580246914, Blast_Score=65, Evalue=8e-11, Organism=Drosophila melanogaster, GI24665243, Length=193, Percent_Identity=30.5699481865285, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 34793; Mature: 34662
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASKQAERRQRAIQEQVARADKKRPKKESTQAMQAGGRPYPAPPFPRQHQPKPGSEKTLN CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PPPLYDVPFYLGSKKLADKVALITGGDSGIGRAVAILFAREGADIALAYLSEHQDAAITK CCCCCCCCHHHCCHHHHCEEEEEECCCCCHHHHEEEEEECCCCCEEEEEHHCCCHHHHHH ERVEAEGKRCLLIAGDVRSQKFCEKAVARTVKEFGRLDVLVNNAAFQIHVSQFEDLTAKH HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHH FDETLKTNLYGYFFMAQAAVKKMKSGSAIINTGSVTGLLGSESLLDYSMTKGGIHAFTRS HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHCCCHHHHHHHH LASHLVPRGIRVNAVAPGPVWTPLNPSDKEAANVSKFGADTPMKRPAQPEEIAPAYVFLA HHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEE SPHCSSYITGEILPIIGGYSGG CCCCCCCCCCCHHEECCCCCCC >Mature Secondary Structure ASKQAERRQRAIQEQVARADKKRPKKESTQAMQAGGRPYPAPPFPRQHQPKPGSEKTLN CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC PPPLYDVPFYLGSKKLADKVALITGGDSGIGRAVAILFAREGADIALAYLSEHQDAAITK CCCCCCCCHHHCCHHHHCEEEEEECCCCCHHHHEEEEEECCCCCEEEEEHHCCCHHHHHH ERVEAEGKRCLLIAGDVRSQKFCEKAVARTVKEFGRLDVLVNNAAFQIHVSQFEDLTAKH HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEECCEEEEEHHHHHHHHHHH FDETLKTNLYGYFFMAQAAVKKMKSGSAIINTGSVTGLLGSESLLDYSMTKGGIHAFTRS HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHCCCHHHHHHHH LASHLVPRGIRVNAVAPGPVWTPLNPSDKEAANVSKFGADTPMKRPAQPEEIAPAYVFLA HHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHCCCEEEEEE SPHCSSYITGEILPIIGGYSGG CCCCCCCCCCCHHEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]