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The map label for this gene is xoxF [H]

Identifier: 116625954

GI number: 116625954

Start: 8682394

End: 8684169

Strand: Reverse

Name: xoxF [H]

Synonym: Acid_6912

Alternate gene names: 116625954

Gene position: 8684169-8682394 (Counterclockwise)

Preceding gene: 116625955

Following gene: 116625953

Centisome position: 87.14

GC content: 57.83

Gene sequence:

>1776_bases
ATGAGGGTGAAGCATTCACTGAGCTGCTGGCTTCTGTTGACGTATTGGGCGTTGGCCCAACCGCAAGGCCAAAAAATCCA
GGATCAGCCCGACGACGGGCAATGGACCATGCCCGCAAAGAACTACGCCTCAACCCGATTCAGTACTTTGACGGAAGTGA
ATACGGGCACAGTCAAGAATCTAAAGCTGGCGTGGACATTCTCAACCGGATTGACGCGCGGACATGAGGCCGCTCCTCTT
GTCATCAACAACACGATGTACATCGTCACGCCGTGGCCTAACATCCTTTACGCGCTCGATCTGACAAAGGCCGGCGCTCC
AGTTAAGTGGTCTTACAAACCGAAGCCGTCGCCCAGTTCGCAGGGAGTTGCCTGTTGCGATGTGGTCAATCGAGGCGCTG
CTTACTACAACGGGCGGATTTACTACAACACCCTGGACATGCACACAGTGGCAATTGACGCCGCGACCGGTAAGGAGATC
TGGAACACAGTGCTGGGCGACATCAATAAGGGTGAATCCATGACGATGGCTCCGCTTGTCGTCAAAGGGATCGTGATCGT
GGGTAATAGCGGTGGGGAGTTTGGAGTCCGAGGCTGGCTCGCAGGACTCGACGCGAAGGACGGGAAAATTGCCTGGCGCG
CTTATGCGGCCGGCCCCGATAAGGATGTTCTCATCGGACCGTCGTTCAGGCCGTTTTATGCCGCCGACCGGGCGCCAGAT
CTAGGCGTCAAGACCTGGTCAGGGGACGCGTGGAAGATTGGAGGCGGTTCGAGCTGGAGTTGGATTTCGTTCGATCCTGA
CCTCGATCTGATCTACTACGGCACAGCCAATCCGGGTCCGTGGAACGCCGACCAACGGCCGGGAGATAACAAGTGGACGT
GTACGATCTTTGCGCGACGTCCGGAAACGGGCGAAGCCGTTTGGGCCTATCAGATGAATCCGCACGACGATCATGATTAC
GACGGCGTAAATGAAAACATCCTCGCCGATCTCACGATCAACGGAAAACTCCGCAAGGTCCTGATCCATCCCGACCGCAA
CGCGCGGATGTACGTCATCGATCGGGCGACAGGCGAGGTGATTTCCGCCGAAACGTACGCATATCAAAACACGAGCGAAG
GCGTTGATCTCAAGACTGGCCGGATCAAGATAAATCCCGCGAAGTCCACGGGGCTGAAGACAGTGAGAGACATTTGCCCC
GCGCCGCCGGGCGGAAAGGATTGGCAGCCGTCCGCCTTTTCGCCCCAAACGGGCTGGCTCTATGTCCCGCATAACAACCT
TTGCTATGAGGCCCAGAGCGTGGAAGCCAACTATATTGCCGGGACGCCTTACGTGGGCCAGAACGTCCGTATGTACGCGG
GCCCGGGAGGTCATCGAGGCGAGTTCAGCGCCTGGGACCCGGTGTCGGCGAAGACCGTGTGGACCGTGAAGGAAATGTTT
CCGGCCTGGAGTGGCGCCTTGGTGACCGCGGGCAACGTGGTCTTTTACGGAACCATGGATGGATGGTTCCGCGCGCTGGA
TGCGAAAACCGGAACGAAGTTGTGGGAGTTCAAAGTGGGATCGGGCATCATCTCCCAGCCGATTACGTACAAGGGTCCGG
ACGGAAAGCAGTACATCGCCGTTCTTTCAGGAGTCGGCGGATGGGCGGGCGCCATCGTCGCCGGCACGTTGAACCCAGTA
GATGGAACCGGCGCTCTGGGATTTTTGAGCGCAATGGCCGACTTGCCCAACTACACGAACACGGGAGGCATGCTCTATGT
TTTCGCACTCCCTTAG

Upstream 100 bases:

>100_bases
TCATTCGACGGGCCGAGCAACAGTTTCAGCAAGCCAACCAACACCGCCTGGAACTGGCCGATGGCGCACTAAGTAGGAAG
GAGAGCAATTCTAGCAGGCT

Downstream 100 bases:

>100_bases
CGTCATGTTTGTCTGGTTAGCTTTGGTCGGGCGCTGCTCCGCGGCCGACGCGCAGTTATTGCGCGTCTGCGCAGATCCGA
ATAACCTTCCATTTTCGAAT

Product: pyrrolo-quinoline quinone

Products: aldehyde; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 591

Protein sequence:

>591_residues
MRVKHSLSCWLLLTYWALAQPQGQKIQDQPDDGQWTMPAKNYASTRFSTLTEVNTGTVKNLKLAWTFSTGLTRGHEAAPL
VINNTMYIVTPWPNILYALDLTKAGAPVKWSYKPKPSPSSQGVACCDVVNRGAAYYNGRIYYNTLDMHTVAIDAATGKEI
WNTVLGDINKGESMTMAPLVVKGIVIVGNSGGEFGVRGWLAGLDAKDGKIAWRAYAAGPDKDVLIGPSFRPFYAADRAPD
LGVKTWSGDAWKIGGGSSWSWISFDPDLDLIYYGTANPGPWNADQRPGDNKWTCTIFARRPETGEAVWAYQMNPHDDHDY
DGVNENILADLTINGKLRKVLIHPDRNARMYVIDRATGEVISAETYAYQNTSEGVDLKTGRIKINPAKSTGLKTVRDICP
APPGGKDWQPSAFSPQTGWLYVPHNNLCYEAQSVEANYIAGTPYVGQNVRMYAGPGGHRGEFSAWDPVSAKTVWTVKEMF
PAWSGALVTAGNVVFYGTMDGWFRALDAKTGTKLWEFKVGSGIISQPITYKGPDGKQYIAVLSGVGGWAGAIVAGTLNPV
DGTGALGFLSAMADLPNYTNTGGMLYVFALP

Sequences:

>Translated_591_residues
MRVKHSLSCWLLLTYWALAQPQGQKIQDQPDDGQWTMPAKNYASTRFSTLTEVNTGTVKNLKLAWTFSTGLTRGHEAAPL
VINNTMYIVTPWPNILYALDLTKAGAPVKWSYKPKPSPSSQGVACCDVVNRGAAYYNGRIYYNTLDMHTVAIDAATGKEI
WNTVLGDINKGESMTMAPLVVKGIVIVGNSGGEFGVRGWLAGLDAKDGKIAWRAYAAGPDKDVLIGPSFRPFYAADRAPD
LGVKTWSGDAWKIGGGSSWSWISFDPDLDLIYYGTANPGPWNADQRPGDNKWTCTIFARRPETGEAVWAYQMNPHDDHDY
DGVNENILADLTINGKLRKVLIHPDRNARMYVIDRATGEVISAETYAYQNTSEGVDLKTGRIKINPAKSTGLKTVRDICP
APPGGKDWQPSAFSPQTGWLYVPHNNLCYEAQSVEANYIAGTPYVGQNVRMYAGPGGHRGEFSAWDPVSAKTVWTVKEMF
PAWSGALVTAGNVVFYGTMDGWFRALDAKTGTKLWEFKVGSGIISQPITYKGPDGKQYIAVLSGVGGWAGAIVAGTLNPV
DGTGALGFLSAMADLPNYTNTGGMLYVFALP
>Mature_591_residues
MRVKHSLSCWLLLTYWALAQPQGQKIQDQPDDGQWTMPAKNYASTRFSTLTEVNTGTVKNLKLAWTFSTGLTRGHEAAPL
VINNTMYIVTPWPNILYALDLTKAGAPVKWSYKPKPSPSSQGVACCDVVNRGAAYYNGRIYYNTLDMHTVAIDAATGKEI
WNTVLGDINKGESMTMAPLVVKGIVIVGNSGGEFGVRGWLAGLDAKDGKIAWRAYAAGPDKDVLIGPSFRPFYAADRAPD
LGVKTWSGDAWKIGGGSSWSWISFDPDLDLIYYGTANPGPWNADQRPGDNKWTCTIFARRPETGEAVWAYQMNPHDDHDY
DGVNENILADLTINGKLRKVLIHPDRNARMYVIDRATGEVISAETYAYQNTSEGVDLKTGRIKINPAKSTGLKTVRDICP
APPGGKDWQPSAFSPQTGWLYVPHNNLCYEAQSVEANYIAGTPYVGQNVRMYAGPGGHRGEFSAWDPVSAKTVWTVKEMF
PAWSGALVTAGNVVFYGTMDGWFRALDAKTGTKLWEFKVGSGIISQPITYKGPDGKQYIAVLSGVGGWAGAIVAGTLNPV
DGTGALGFLSAMADLPNYTNTGGMLYVFALP

Specific function: Gdh Is Probably Involved In Energy Conservation Rather Than In Sugar Metabolism. [C]

COG id: COG4993

COG function: function code G; Glucose dehydrogenase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786316, Length=372, Percent_Identity=26.6129032258064, Blast_Score=115, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019556
- InterPro:   IPR019551
- InterPro:   IPR018391
- InterPro:   IPR017512
- InterPro:   IPR002372
- InterPro:   IPR011047
- InterPro:   IPR001479 [H]

Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]

EC number: 1.1.99.8

Molecular weight: Translated: 64287; Mature: 64287

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKHSLSCWLLLTYWALAQPQGQKIQDQPDDGQWTMPAKNYASTRFSTLTEVNTGTVKN
CCCCCCCHHHHEEHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHEEEECCCCCEEE
LKLAWTFSTGLTRGHEAAPLVINNTMYIVTPWPNILYALDLTKAGAPVKWSYKPKPSPSS
EEEEEEEECCCCCCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCC
QGVACCDVVNRGAAYYNGRIYYNTLDMHTVAIDAATGKEIWNTVLGDINKGESMTMAPLV
CCEEEEHHHHCCCEEECCEEEEEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEEE
VKGIVIVGNSGGEFGVRGWLAGLDAKDGKIAWRAYAAGPDKDVLIGPSFRPFYAADRAPD
EEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEECCCCCCCEECCCCCC
LGVKTWSGDAWKIGGGSSWSWISFDPDLDLIYYGTANPGPWNADQRPGDNKWTCTIFARR
CCEEECCCCEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEC
PETGEAVWAYQMNPHDDHDYDGVNENILADLTINGKLRKVLIHPDRNARMYVIDRATGEV
CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCCCCE
ISAETYAYQNTSEGVDLKTGRIKINPAKSTGLKTVRDICPAPPGGKDWQPSAFSPQTGWL
EEEEEEEECCCCCCCEEECCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
YVPHNNLCYEAQSVEANYIAGTPYVGQNVRMYAGPGGHRGEFSAWDPVSAKTVWTVKEMF
EECCCCEEEEECCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHC
PAWSGALVTAGNVVFYGTMDGWFRALDAKTGTKLWEFKVGSGIISQPITYKGPDGKQYIA
CCCCCEEEEECCEEEEECCCHHHHEECCCCCCEEEEEEECCCCCCCCEEEECCCCCEEEE
VLSGVGGWAGAIVAGTLNPVDGTGALGFLSAMADLPNYTNTGGMLYVFALP
EEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MRVKHSLSCWLLLTYWALAQPQGQKIQDQPDDGQWTMPAKNYASTRFSTLTEVNTGTVKN
CCCCCCCHHHHEEHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCHHHEEEECCCCCEEE
LKLAWTFSTGLTRGHEAAPLVINNTMYIVTPWPNILYALDLTKAGAPVKWSYKPKPSPSS
EEEEEEEECCCCCCCCCCCEEECCEEEEEECCCCEEEEEEECCCCCCEEECCCCCCCCCC
QGVACCDVVNRGAAYYNGRIYYNTLDMHTVAIDAATGKEIWNTVLGDINKGESMTMAPLV
CCEEEEHHHHCCCEEECCEEEEEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCEEEEEEE
VKGIVIVGNSGGEFGVRGWLAGLDAKDGKIAWRAYAAGPDKDVLIGPSFRPFYAADRAPD
EEEEEEEECCCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCEEECCCCCCCEECCCCCC
LGVKTWSGDAWKIGGGSSWSWISFDPDLDLIYYGTANPGPWNADQRPGDNKWTCTIFARR
CCEEECCCCEEECCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEEEC
PETGEAVWAYQMNPHDDHDYDGVNENILADLTINGKLRKVLIHPDRNARMYVIDRATGEV
CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCEEEEEECCCCCE
ISAETYAYQNTSEGVDLKTGRIKINPAKSTGLKTVRDICPAPPGGKDWQPSAFSPQTGWL
EEEEEEEECCCCCCCEEECCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
YVPHNNLCYEAQSVEANYIAGTPYVGQNVRMYAGPGGHRGEFSAWDPVSAKTVWTVKEMF
EECCCCEEEEECCCCCEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEHHHHC
PAWSGALVTAGNVVFYGTMDGWFRALDAKTGTKLWEFKVGSGIISQPITYKGPDGKQYIA
CCCCCEEEEECCEEEEECCCHHHHEECCCCCCEEEEEEECCCCCCCCEEEECCCCCEEEE
VLSGVGGWAGAIVAGTLNPVDGTGALGFLSAMADLPNYTNTGGMLYVFALP
EEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: primary alcohol; acceptor

Specific reaction: a primary alcohol + acceptor = an aldehyde + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1657873 [H]