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The map label for this gene is tnpA [H]

Identifier: 116625940

GI number: 116625940

Start: 8671371

End: 8672621

Strand: Reverse

Name: tnpA [H]

Synonym: Acid_6898

Alternate gene names: 116625940

Gene position: 8672621-8671371 (Counterclockwise)

Preceding gene: 116625942

Following gene: 116625936

Centisome position: 87.03

GC content: 58.27

Gene sequence:

>1251_bases
ATGGAACTCATCACGATTCTAAATCGCTGCCACCGCTTCCGGGGATTCGTTTACCACCAGGCTCGATTCACTTCCGACCA
CAAGAGCATTGAGATCTCCGTGCGACCGCGCAAGCGTTCCGCCGCTGTCTGCTCGCGGTGCCATCAGCCTGCGCCCGGCT
ACGATCAACTCCCCGAGCGGCGTTTCGAATTCATCCCCTTTTGGGGATTCTTCGTCTTCCTGCTGTACGCCATGCGACGT
GTCGATTGCCACCGCTGCGGCGCCGTCGTCGTCGAAGAAGTCCCCTGGGGCGATGGCAAGCGCACCTTGACCAGAGCTTA
TATGTTGTTCCTGGCGCGATGGGCCCGGCGGCTGTCCTGGAAAGAAACTGCCGAAGCGTTTCGTACTTCCTGGGAGAAGG
TCTTCGATGCGGTCGAGCACGTCGTCACCTGGGGCTTGGAACACCGGATTCTGGGACAGATCGATGCCATCGGAGTGGAC
GAGATCCAATACGCCAAGGGCCGCAAGTACCTGACGCTGGTTTACCAAATCGATATCGGCATGACCCGCCTACTCTGGAT
CGGCAAAGAGAGAACCATCGAATCCTTCCAGGGATTCTTCACCGCCATGGGCAAGGACGTAATTTCCAAAATCGTATTCG
TCTGCTCCGACATGTGGGAGCCCTATCTGAAGCTCATCCGCGAAAACTGCTCCGAGGCCCTGCATATTCTCGACCGCTTC
CACATCGTCGCCAATATGAACAAGGCACTCGACCACGTCCGTGCCGAGGAAACCAGCCGCATGAAACGCGAGGGCCGCGC
CCCGGTCCTCAAGAAGTCGCGTTGGCTCTTGCTCCGCCACAGCCACAATCTCGGCGCCGACCAGCACTTTCGCTTGCGCG
ATCTGCTCCGCTACAACCTCAAGACCGTCCGTGCCTACCTTCTGAAGGAAGCCTTTCCGCAACTCTGGGAATACAGTTCG
CCCGCGTGGGCCGGCAAGTTCCTCGACGAGTGGTGTCGCCAGACCATGCGCTCCCGTATCGAACCCATGAAGAAGATAGC
CCGTTCGCTACGCAACCATCGCGAACTGATCCTCAACTACTTCCGCGCTCAAGAGCTGCTATCCAGCGGTGTCGTGGAGG
GCCTGAACAACAAGGCCAAAGTCACCATGAGAACATCGTACGGCTTCCGCACCTACCGCGTCCTTGAACTCGCACTCTAT
CACTCACTTGGCAAGCTACCCGAGCCGGAGTCCACCCACGATTTCTTCTGA

Upstream 100 bases:

>100_bases
CCAGCCGTCCAGGCCGCGGCAGTACCGCTCCAGCAAAGCAGAGGATGCTGGGGCAGCGCCGTTTATCGTGGAAGTCTTCG
CCGACGTTTGCTTTCGCGCC

Downstream 100 bases:

>100_bases
CGAGCCAATTTCTTTTTGATTCGGGACATTGACGAAGGCCCGCGTGCCCGAGTTCTCCAGCTGGAAAGATTCGGGGTGAC
CGTCCAACGGGATTTCGCTG

Product: transposase, IS204/IS1001/IS1096/IS1165 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MELITILNRCHRFRGFVYHQARFTSDHKSIEISVRPRKRSAAVCSRCHQPAPGYDQLPERRFEFIPFWGFFVFLLYAMRR
VDCHRCGAVVVEEVPWGDGKRTLTRAYMLFLARWARRLSWKETAEAFRTSWEKVFDAVEHVVTWGLEHRILGQIDAIGVD
EIQYAKGRKYLTLVYQIDIGMTRLLWIGKERTIESFQGFFTAMGKDVISKIVFVCSDMWEPYLKLIRENCSEALHILDRF
HIVANMNKALDHVRAEETSRMKREGRAPVLKKSRWLLLRHSHNLGADQHFRLRDLLRYNLKTVRAYLLKEAFPQLWEYSS
PAWAGKFLDEWCRQTMRSRIEPMKKIARSLRNHRELILNYFRAQELLSSGVVEGLNNKAKVTMRTSYGFRTYRVLELALY
HSLGKLPEPESTHDFF

Sequences:

>Translated_416_residues
MELITILNRCHRFRGFVYHQARFTSDHKSIEISVRPRKRSAAVCSRCHQPAPGYDQLPERRFEFIPFWGFFVFLLYAMRR
VDCHRCGAVVVEEVPWGDGKRTLTRAYMLFLARWARRLSWKETAEAFRTSWEKVFDAVEHVVTWGLEHRILGQIDAIGVD
EIQYAKGRKYLTLVYQIDIGMTRLLWIGKERTIESFQGFFTAMGKDVISKIVFVCSDMWEPYLKLIRENCSEALHILDRF
HIVANMNKALDHVRAEETSRMKREGRAPVLKKSRWLLLRHSHNLGADQHFRLRDLLRYNLKTVRAYLLKEAFPQLWEYSS
PAWAGKFLDEWCRQTMRSRIEPMKKIARSLRNHRELILNYFRAQELLSSGVVEGLNNKAKVTMRTSYGFRTYRVLELALY
HSLGKLPEPESTHDFF
>Mature_416_residues
MELITILNRCHRFRGFVYHQARFTSDHKSIEISVRPRKRSAAVCSRCHQPAPGYDQLPERRFEFIPFWGFFVFLLYAMRR
VDCHRCGAVVVEEVPWGDGKRTLTRAYMLFLARWARRLSWKETAEAFRTSWEKVFDAVEHVVTWGLEHRILGQIDAIGVD
EIQYAKGRKYLTLVYQIDIGMTRLLWIGKERTIESFQGFFTAMGKDVISKIVFVCSDMWEPYLKLIRENCSEALHILDRF
HIVANMNKALDHVRAEETSRMKREGRAPVLKKSRWLLLRHSHNLGADQHFRLRDLLRYNLKTVRAYLLKEAFPQLWEYSS
PAWAGKFLDEWCRQTMRSRIEPMKKIARSLRNHRELILNYFRAQELLSSGVVEGLNNKAKVTMRTSYGFRTYRVLELALY
HSLGKLPEPESTHDFF

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 49215; Mature: 49215

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELITILNRCHRFRGFVYHQARFTSDHKSIEISVRPRKRSAAVCSRCHQPAPGYDQLPER
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCHHHCHHH
RFEFIPFWGFFVFLLYAMRRVDCHRCGAVVVEEVPWGDGKRTLTRAYMLFLARWARRLSW
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCH
KETAEAFRTSWEKVFDAVEHVVTWGLEHRILGQIDAIGVDEIQYAKGRKYLTLVYQIDIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEEEEECCC
MTRLLWIGKERTIESFQGFFTAMGKDVISKIVFVCSDMWEPYLKLIRENCSEALHILDRF
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HIVANMNKALDHVRAEETSRMKREGRAPVLKKSRWLLLRHSHNLGADQHFRLRDLLRYNL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
KTVRAYLLKEAFPQLWEYSSPAWAGKFLDEWCRQTMRSRIEPMKKIARSLRNHRELILNY
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRAQELLSSGVVEGLNNKAKVTMRTSYGFRTYRVLELALYHSLGKLPEPESTHDFF
HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MELITILNRCHRFRGFVYHQARFTSDHKSIEISVRPRKRSAAVCSRCHQPAPGYDQLPER
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCHHHCHHH
RFEFIPFWGFFVFLLYAMRRVDCHRCGAVVVEEVPWGDGKRTLTRAYMLFLARWARRLSW
HHHHCCHHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHCCH
KETAEAFRTSWEKVFDAVEHVVTWGLEHRILGQIDAIGVDEIQYAKGRKYLTLVYQIDIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEEEEEEEEECCC
MTRLLWIGKERTIESFQGFFTAMGKDVISKIVFVCSDMWEPYLKLIRENCSEALHILDRF
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HIVANMNKALDHVRAEETSRMKREGRAPVLKKSRWLLLRHSHNLGADQHFRLRDLLRYNL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCEEEEEECCCCCCCCHHHHHHHHHHHH
KTVRAYLLKEAFPQLWEYSSPAWAGKFLDEWCRQTMRSRIEPMKKIARSLRNHRELILNY
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FRAQELLSSGVVEGLNNKAKVTMRTSYGFRTYRVLELALYHSLGKLPEPESTHDFF
HHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]