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The map label for this gene is 116625867

Identifier: 116625867

GI number: 116625867

Start: 8552284

End: 8553252

Strand: Reverse

Name: 116625867

Synonym: Acid_6821

Alternate gene names: NA

Gene position: 8553252-8552284 (Counterclockwise)

Preceding gene: 116625868

Following gene: 116625866

Centisome position: 85.83

GC content: 62.85

Gene sequence:

>969_bases
ATGCCACCCCCCACAAGTAGAGTCCGGTTCATCGAGCCGATGCTGCTACGACGAACCGAGCACCTCCCGGAGGGTGACGG
CGTTTCCTACGAGCTGAAACTGGATGGCTTCCGCGCCATCGCCTACAAGACCGGCGGCAAGGTCCACCTCCGCTCCCGCA
ACGACAAGGACTTCAACGCCAAGTACCCCGTCATCGTGAAGGCCCTCGCGCACATGCCCGATGAAACCGTGATCGACGGG
GAGATCGTGGCCCTGGATGGGGTTGGCCGTCCTTCGTTCAGCGCCCTGCAGAACTACGGCTTCTCCACGGGGCCGCTCTT
GTACTACGCATTCGACGTGATGGTGATCGCGGGGGAGGACGTGATGGCGCTGCCACTGGAGGACCGCAGGGAGCTTCTGC
GGAGCCGCGTGCTGGCGAAGCTGGCCGATCCCATCCGCGAGTCACCGGAGTTGGTCGCCACTCTGCCGCAGCTGATTCAG
TCGGTGAAGGCCCAGGGCCTGGAAGGGCCGATCGCCAAGCGCCGGGATAGCCGCTATGAGGCCGGGCAGCGCTCCGGCGC
ATGGCAGAAGATGCGCATGAACCAGGGGCAGGATTTCGTCATCGCCGGGTACACGCCCAGCGGCAACGGCTTTGACGCCC
TGATTTTCGGATACTACGACGGGGACCGGCTAATCTACGTGGCCCGAACCCGCAACGGCTTCACTCCGGCATCGCGAGAG
AAGCTGTTCAGGAGGTTTAGAGGGCTGGAGACGGTGCAGTGCCCTTTCGCTAATCTGCTGGAAGCCAAGGTCGGAAGGTG
GGGCGTGGGTCTTACTGCGGAGAAGATGAATGAGTGCAAGTGGCTTAGGCCGGAGCTGGTGGGGCAGTTTGAATTCCTGG
AGATCACGCCTGACAATCACCTGCGCCATTCCCGTTTCATTGGGCTGCGGGAGGACAAGAAGGCGCGGGAGGTGGAACGT
GACGGCTAG

Upstream 100 bases:

>100_bases
ATAAAGACGCCGATTACCGCGAGAAGCTTGGTGTCCACGCCTTCACCGACTTTGGCGACAGCATCAATTGAAGCGAGACT
GTCGTAAACTGGGCGAGTCC

Downstream 100 bases:

>100_bases
AGTGCTAACCAGTCTGGCCGGTCCCATCCGCGAATCACCACCCGTTGGCCTAATGTGGCCCCGCGTTGGGAAACATGGTA
TTTCTTGCAGAGCATGGAAA

Product: ATP dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MPPPTSRVRFIEPMLLRRTEHLPEGDGVSYELKLDGFRAIAYKTGGKVHLRSRNDKDFNAKYPVIVKALAHMPDETVIDG
EIVALDGVGRPSFSALQNYGFSTGPLLYYAFDVMVIAGEDVMALPLEDRRELLRSRVLAKLADPIRESPELVATLPQLIQ
SVKAQGLEGPIAKRRDSRYEAGQRSGAWQKMRMNQGQDFVIAGYTPSGNGFDALIFGYYDGDRLIYVARTRNGFTPASRE
KLFRRFRGLETVQCPFANLLEAKVGRWGVGLTAEKMNECKWLRPELVGQFEFLEITPDNHLRHSRFIGLREDKKAREVER
DG

Sequences:

>Translated_322_residues
MPPPTSRVRFIEPMLLRRTEHLPEGDGVSYELKLDGFRAIAYKTGGKVHLRSRNDKDFNAKYPVIVKALAHMPDETVIDG
EIVALDGVGRPSFSALQNYGFSTGPLLYYAFDVMVIAGEDVMALPLEDRRELLRSRVLAKLADPIRESPELVATLPQLIQ
SVKAQGLEGPIAKRRDSRYEAGQRSGAWQKMRMNQGQDFVIAGYTPSGNGFDALIFGYYDGDRLIYVARTRNGFTPASRE
KLFRRFRGLETVQCPFANLLEAKVGRWGVGLTAEKMNECKWLRPELVGQFEFLEITPDNHLRHSRFIGLREDKKAREVER
DG
>Mature_321_residues
PPPTSRVRFIEPMLLRRTEHLPEGDGVSYELKLDGFRAIAYKTGGKVHLRSRNDKDFNAKYPVIVKALAHMPDETVIDGE
IVALDGVGRPSFSALQNYGFSTGPLLYYAFDVMVIAGEDVMALPLEDRRELLRSRVLAKLADPIRESPELVATLPQLIQS
VKAQGLEGPIAKRRDSRYEAGQRSGAWQKMRMNQGQDFVIAGYTPSGNGFDALIFGYYDGDRLIYVARTRNGFTPASREK
LFRRFRGLETVQCPFANLLEAKVGRWGVGLTAEKMNECKWLRPELVGQFEFLEITPDNHLRHSRFIGLREDKKAREVERD
G

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 36420; Mature: 36289

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00697 DNA_LIGASE_A1 ; PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPPPTSRVRFIEPMLLRRTEHLPEGDGVSYELKLDGFRAIAYKTGGKVHLRSRNDKDFNA
CCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCEEEEECCCCCCCCC
KYPVIVKALAHMPDETVIDGEIVALDGVGRPSFSALQNYGFSTGPLLYYAFDVMVIAGED
CCHHHHHHHHHCCCCEEECCEEEEEECCCCCCHHHHHHCCCCCCCHHEEEEEEEEECCCC
VMALPLEDRRELLRSRVLAKLADPIRESPELVATLPQLIQSVKAQGLEGPIAKRRDSRYE
EEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHH
AGQRSGAWQKMRMNQGQDFVIAGYTPSGNGFDALIFGYYDGDRLIYVARTRNGFTPASRE
CCCCCCCHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHH
KLFRRFRGLETVQCPFANLLEAKVGRWGVGLTAEKMNECKWLRPELVGQFEFLEITPDNH
HHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHCCCEEEEEECCCCC
LRHSRFIGLREDKKAREVERDG
CCHHHCCCCCCCHHHHHHCCCC
>Mature Secondary Structure 
PPPTSRVRFIEPMLLRRTEHLPEGDGVSYELKLDGFRAIAYKTGGKVHLRSRNDKDFNA
CCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCEEEEECCCCCCCCC
KYPVIVKALAHMPDETVIDGEIVALDGVGRPSFSALQNYGFSTGPLLYYAFDVMVIAGED
CCHHHHHHHHHCCCCEEECCEEEEEECCCCCCHHHHHHCCCCCCCHHEEEEEEEEECCCC
VMALPLEDRRELLRSRVLAKLADPIRESPELVATLPQLIQSVKAQGLEGPIAKRRDSRYE
EEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHH
AGQRSGAWQKMRMNQGQDFVIAGYTPSGNGFDALIFGYYDGDRLIYVARTRNGFTPASRE
CCCCCCCHHHHHHCCCCCEEEEEECCCCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHH
KLFRRFRGLETVQCPFANLLEAKVGRWGVGLTAEKMNECKWLRPELVGQFEFLEITPDNH
HHHHHHCCCCEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHCCCEEEEEECCCCC
LRHSRFIGLREDKKAREVERDG
CCHHHCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]