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The map label for this gene is xerC [C]

Identifier: 116625845

GI number: 116625845

Start: 8529959

End: 8531050

Strand: Reverse

Name: xerC [C]

Synonym: Acid_6799

Alternate gene names: 116625845

Gene position: 8531050-8529959 (Counterclockwise)

Preceding gene: 116625846

Following gene: 116625844

Centisome position: 85.6

GC content: 59.07

Gene sequence:

>1092_bases
ATGAAAGCCCCGCTTCCGAATCTACTCGGCGCCGCAATCCGCGACTACTTCACCGACCACCTTCCCCGCCTTCGGGGGAC
CAGTCCGCATACCATCCACAGCTACCGCGACAGCATGGTTCTGCTGTTGCGGTTTCTTGCCCGGCAACGGAACAAGCCGA
TTACGGGACTCGACCTTACGGATCTCGATCCTCCCGGAATCCTGGCGTTCCTGTCCCATCTTGAAAAGGAGCGTAAGAAT
TGCGTCTCCACGCGAAATGTCCGCCTATCCGCCATCCACGTCTTCTTTCATTTTGTGGCGTCGCGTAATCCGGAGCATCT
CGAGTTGGCCCAACGCGTCCTGGGCATTCCGTTTAAGCGCGCGCGACAACGAGCCATGGATTACCTGGAATACGATGAGA
TTGACGCGATTCTCAAAGCGATCGACCGGACCACCCCGCAGGGCAGCCGTGACTATGCTCTCCTGGCGACCATGTTCAAC
ACTGGCGGCCGCGTCCAGGAGATCGCCGATCTGCGCGCCTGTGACCTCCAACTGACCAAACCCTTTCAAGTGAGACTATT
TGGCAAAGGGAGAAAGGAGCGCTACTGCCCGCTGTGGCCGCAGACAGCCGCGGTGTTGAGAGCGTTCAGTGATCAACGCA
CCCTGGATCTGCGGTCTGAATCTCGGGTGTTTCTGAATCACCGCGGCCGACCGCTCACCCGGTTCGGAATCCGCTACATT
CTCGCCAAGTGTCTCGGCTTAGCTTGCGCCGATGTTCCAAATCTCCGCACGAAACGGCTGCACCCCCACAGCGTTCGTCA
CAGTACGGCCGTCGCTCTCCTGAAATCGGGCGTCGACCTATCGAGCATCAGTCATCTGCTGGGGCATGCCAGTCCGACCA
CGACGAACCGCTATGCGAAAGTCGACCTCGAAATGAAACGTCAGGCCATCGCCAAGGTCAAGCCCGTCCCCGCCGCTCCC
GCACACCCTGGGGCAAGGACCACACCATCCTTGACTGGCTGGAGTCCCTATAAGCCCGCCATAAATGTGGAGTTGGAAAC
CGGGGAACCCGTGATTCGATGCGGTTGCCCCGCGTCAACTCCACATTTCTGA

Upstream 100 bases:

>100_bases
TGCACTTCATCGAACCGCTCCGCACCGCCGCTAGCAAGCGGTTCGCGGCGCATTACGGTGAGTTGGTCTCCCCGCTGCCG
CAGCCGGCCAGGAGGCGCGG

Downstream 100 bases:

>100_bases
CAACTTCACATTAGTCGATAAATGTTCAGCTGAACATTTATCGACGAGGTCGGCTATCTGTCATTCGACGACAAGGCGGC
GGATCTACTTTACGAAGTCG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MKAPLPNLLGAAIRDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLTDLDPPGILAFLSHLEKERKN
CVSTRNVRLSAIHVFFHFVASRNPEHLELAQRVLGIPFKRARQRAMDYLEYDEIDAILKAIDRTTPQGSRDYALLATMFN
TGGRVQEIADLRACDLQLTKPFQVRLFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRVFLNHRGRPLTRFGIRYI
LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVDLEMKRQAIAKVKPVPAAP
AHPGARTTPSLTGWSPYKPAINVELETGEPVIRCGCPASTPHF

Sequences:

>Translated_363_residues
MKAPLPNLLGAAIRDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLTDLDPPGILAFLSHLEKERKN
CVSTRNVRLSAIHVFFHFVASRNPEHLELAQRVLGIPFKRARQRAMDYLEYDEIDAILKAIDRTTPQGSRDYALLATMFN
TGGRVQEIADLRACDLQLTKPFQVRLFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRVFLNHRGRPLTRFGIRYI
LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVDLEMKRQAIAKVKPVPAAP
AHPGARTTPSLTGWSPYKPAINVELETGEPVIRCGCPASTPHF
>Mature_363_residues
MKAPLPNLLGAAIRDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLTDLDPPGILAFLSHLEKERKN
CVSTRNVRLSAIHVFFHFVASRNPEHLELAQRVLGIPFKRARQRAMDYLEYDEIDAILKAIDRTTPQGSRDYALLATMFN
TGGRVQEIADLRACDLQLTKPFQVRLFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRVFLNHRGRPLTRFGIRYI
LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAKVDLEMKRQAIAKVKPVPAAP
AHPGARTTPSLTGWSPYKPAINVELETGEPVIRCGCPASTPHF

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=242, Percent_Identity=28.9256198347107, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1789261, Length=298, Percent_Identity=28.1879194630872, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790767, Length=182, Percent_Identity=31.3186813186813, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 40763; Mature: 40763

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPLPNLLGAAIRDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DLDPPGILAFLSHLEKERKNCVSTRNVRLSAIHVFFHFVASRNPEHLELAQRVLGIPFKR
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
ARQRAMDYLEYDEIDAILKAIDRTTPQGSRDYALLATMFNTGGRVQEIADLRACDLQLTK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEECC
PFQVRLFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRVFLNHRGRPLTRFGIRYI
CEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCCCCCHHHHHHHHH
LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAK
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEE
VDLEMKRQAIAKVKPVPAAPAHPGARTTPSLTGWSPYKPAINVELETGEPVIRCGCPAST
EHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCC
PHF
CCC
>Mature Secondary Structure
MKAPLPNLLGAAIRDYFTDHLPRLRGTSPHTIHSYRDSMVLLLRFLARQRNKPITGLDLT
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
DLDPPGILAFLSHLEKERKNCVSTRNVRLSAIHVFFHFVASRNPEHLELAQRVLGIPFKR
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
ARQRAMDYLEYDEIDAILKAIDRTTPQGSRDYALLATMFNTGGRVQEIADLRACDLQLTK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCEEECC
PFQVRLFGKGRKERYCPLWPQTAAVLRAFSDQRTLDLRSESRVFLNHRGRPLTRFGIRYI
CEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCCCCCHHHHHHHHH
LAKCLGLACADVPNLRTKRLHPHSVRHSTAVALLKSGVDLSSISHLLGHASPTTTNRYAK
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCEEE
VDLEMKRQAIAKVKPVPAAPAHPGARTTPSLTGWSPYKPAINVELETGEPVIRCGCPAST
EHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCC
PHF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]