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The map label for this gene is greA [H]

Identifier: 116625760

GI number: 116625760

Start: 8413040

End: 8413534

Strand: Direct

Name: greA [H]

Synonym: Acid_6710

Alternate gene names: 116625760

Gene position: 8413040-8413534 (Clockwise)

Preceding gene: 116625759

Following gene: 116625761

Centisome position: 84.42

GC content: 54.55

Gene sequence:

>495_bases
ATGACGGACATTAAGAAAAAACTTCAGGACGAGATTACTGCGCTCGAATACGAACTGCACGTCGATTTGCCAAAGGAGAT
CCTGAAGGCACGGTTGCACGGGGACTTGAAAGAAAACGCTGAGTATCACGCGGCGAAGGATCGCCAGGGCTTCGTCAGCG
CTCGCCTTGGGCAGTTGAAATCGCGTTTGGGTCAGCTGGCGATGATCGATTTCACGAAAATTCCGCGCGACAAGGCGGGG
TTAGGCTCGACGGTGGTCGTGCTGGACGTGAAAAGCGATCAGGAAATCACGTATCATCTGGTGACGAGCGAAGAGGCCGA
CGCGCCGAACGGCAAGGTTTCGACGACGTCGCCAATTGGTCGCGCGCTGCTCGGCAAGACAGTGGGCGATGAGGTTAAAG
TGATGAGCCCGGGAGGAGTTAAGGAACTCGAGATCCTCAAGCTCACCACCATACACGACATCGTGGAAACCGAAGTCGAA
AAAGAAGTGGAATGA

Upstream 100 bases:

>100_bases
AACTCTCGATCGGCGGCGCGGACGTGTCGGTGAATCTAAACGTGCAGTAAAAGGGGCCTCCCACGGGCTATAATGGCACC
TTGGGAGCTGTATCCCCTCG

Downstream 100 bases:

>100_bases
AGTGATATGACCTTCACGCGCGGGATCGGCTTATTCTTTGGAGCGATCATCAATCGGATCGTGCGCTGGCTCGCATTGTC
GAAGATCCACCCGAACGTGC

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: Transcript cleavage factor greA [H]

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MTDIKKKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQLAMIDFTKIPRDKAG
LGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLGKTVGDEVKVMSPGGVKELEILKLTTIHDIVETEVE
KEVE

Sequences:

>Translated_164_residues
MTDIKKKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQLAMIDFTKIPRDKAG
LGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLGKTVGDEVKVMSPGGVKELEILKLTTIHDIVETEVE
KEVE
>Mature_163_residues
TDIKKKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQLAMIDFTKIPRDKAGL
GSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLGKTVGDEVKVMSPGGVKELEILKLTTIHDIVETEVEK
EVE

Specific function: Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the greA/greB family [H]

Homologues:

Organism=Escherichia coli, GI87082225, Length=144, Percent_Identity=41.6666666666667, Blast_Score=117, Evalue=5e-28,

Paralogues:

None

Copy number: 259 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018151
- InterPro:   IPR006359
- InterPro:   IPR001437
- InterPro:   IPR022691 [H]

Pfam domain/function: PF01272 GreA_GreB; PF03449 GreA_GreB_N [H]

EC number: NA

Molecular weight: Translated: 18073; Mature: 17942

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: PS00829 GREAB_1 ; PS00830 GREAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIKKKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLK
CCHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHH
SRLGQLAMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIG
HHHCCEEEEEHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHH
RALLGKTVGDEVKVMSPGGVKELEILKLTTIHDIVETEVEKEVE
HHHHCCCCCCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDIKKKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLK
CHHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHH
SRLGQLAMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIG
HHHCCEEEEEHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCHHH
RALLGKTVGDEVKVMSPGGVKELEILKLTTIHDIVETEVEKEVE
HHHHCCCCCCCEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA