Click here to switch to the map view.

The map label for this gene is rpmB

Identifier: 116625692

GI number: 116625692

Start: 8329760

End: 8329951

Strand: Reverse

Name: rpmB

Synonym: Acid_6641

Alternate gene names: 116625692

Gene position: 8329951-8329760 (Counterclockwise)

Preceding gene: 116625693

Following gene: 116625688

Centisome position: 83.59

GC content: 59.38

Gene sequence:

>192_bases
ATGGCACAAACTTGTGATTTATGTGGTCGCGGCCCGGCCTTCGGAAACCGCATCAGCCACGCTCACAACGTCACCAAGCG
GCGCTGGAATATCAACCTCCAGTCGGTTCGCGCCCTGGTGAACGGCGCGGGCAGGCGGATGCGGGTCTGCACGTCGTGCA
TCCGCAATAACAAAGTCCAGAAAGTCGCGTAA

Upstream 100 bases:

>100_bases
ATTGTGGCGGGGGCGGTGACGATCGCGCTTGAGCGGTAGTCCGCTGCCACCTGAATTTGCTATACTTGGAGTTCGAAAGT
TTACGGGAGATTTCTGTCTT

Downstream 100 bases:

>100_bases
TTTCCGCGTTTTTCCTGTCGGTAATCCCAGCCAGGTAAATCCCTGTCAGGCGTCTGGCCCCTCACCTGCAACCTTGTTGG
TTGTCCAGGCTGGTTGCTCT

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 63; Mature: 62

Protein sequence:

>63_residues
MAQTCDLCGRGPAFGNRISHAHNVTKRRWNINLQSVRALVNGAGRRMRVCTSCIRNNKVQKVA

Sequences:

>Translated_63_residues
MAQTCDLCGRGPAFGNRISHAHNVTKRRWNINLQSVRALVNGAGRRMRVCTSCIRNNKVQKVA
>Mature_62_residues
AQTCDLCGRGPAFGNRISHAHNVTKRRWNINLQSVRALVNGAGRRMRVCTSCIRNNKVQKVA

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_SOLUE (Q01S07)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_827848.1
- ProteinModelPortal:   Q01S07
- SMR:   Q01S07
- STRING:   Q01S07
- GeneID:   4425234
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_6641
- eggNOG:   COG0227
- HOGENOM:   HBG597003
- OMA:   NACTSCI
- ProtClustDB:   PRK00359
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 7036; Mature: 6905

Theoretical pI: Translated: 12.22; Mature: 12.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
9.5 %Cys+Met (Translated Protein)
6.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTCDLCGRGPAFGNRISHAHNVTKRRWNINLQSVRALVNGAGRRMRVCTSCIRNNKVQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCC
KVA
CCC
>Mature Secondary Structure 
AQTCDLCGRGPAFGNRISHAHNVTKRRWNINLQSVRALVNGAGRRMRVCTSCIRNNKVQ
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCC
KVA
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA