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The map label for this gene is ydcP [H]

Identifier: 116625618

GI number: 116625618

Start: 8227927

End: 8230407

Strand: Direct

Name: ydcP [H]

Synonym: Acid_6567

Alternate gene names: 116625618

Gene position: 8227927-8230407 (Clockwise)

Preceding gene: 116625615

Following gene: 116625620

Centisome position: 82.56

GC content: 65.98

Gene sequence:

>2481_bases
ATGTTGTTCCCCCGTCGAAAACCTGAAGTCATGACTCCGGCCGGATATTGGCCGCAACTGCGCGCTGCGATGGAAGCAGG
CGCGGACGCCGTCTATTTCGGGCTGAAGCACTTCAGTGCGCGAGCCAAAGTGGGCTTCTCGCTGGAGGAATTGCCGGAAG
TGATGGCGACCCTGCATCGGCGCGGGGTCAAGGGCTTCGTAACCTTTAATACGCTGGTATTCCGCCACGAACTGGATGAA
GCCGCGCGGGCGCTGGCGCAGATCGCCGAAGCGGGCGCCGACGCGATCATCGTGCAGGACGTGGGAATCGTCCGCATGGC
GCGCGAGATCGCGCCCGGCCTGGAGCTTCACGGCAGCACGCAGATGAGCGTCACGAGCGCGGATGGCGTGCGCCTGGCAC
AGAGTTTCGGCGTGCACCGCGTAACGCTGGCGCGTGAACTTTCGCTGGCCGAGGTGCGCGCGATTCGGGAAGCGACGGAT
TGCGAACTCGAGATCTTCGTCCACGGCGCGCTGTGCGTGGCGTACTCGGGCCAGTGCTTTTCGTCCGAGGCGTGGGGCGG
CCGCAGCGCCAATCGCGGACAATGCGCGCAGGCCTGCCGCCTGCCGTACGAGATGCTGGTGGATGGCAAGGTGAAGCCCC
TGGCCGACGCGCGCTACCTGCTGTCGCCGGGCGATTTGTACGCGCTGCACCAGGTGCCGGAGATCGTGGACATCGGGATC
TCCACGCTGAAAATCGAGGGCCGCTACAAGGATGCGGATTATGTGGCGCTGACCACGGCGGCCTACCGGCAGGCTGTAGA
CGAAGCCTGGGCCGGCCGCAAGCCGCGCATCGATGCGGCCACGGAATTGCGCCTTGAGCAGGTGTATTCGCGCGGACTGG
GCGCGCACTTCGTCACCGGGACGAACCATCAGGCGGTGGTGCGCGGGCGGGCTCCGCGGCATCGCGGCGTGCTGATGGGG
CGCGTAGCTCGAATCACGGAAAAGGGCGTAGTGATTACTCCCGCAGAGGCGCAGCGCATCGCGCCGTTAAAGCCGGGAGA
CGGCGTGGTCTTCGACGCCGCCGACTGGCGAACTCCCGAAGAGGCGGAAGAGGGCGGCCGGATTTTCGAGATCGACCGCG
GCGAACTGCGCTTCGGCAACGGCGTGGTAAACACGTCGCGAATTCGTCCCGGCGATTTGGTGTGGCGCACGCACGATCCG
GATCTCGACAAGCTGGTCCGCATGTACACCGAGGCCGCCGCGCCGCTGCGCAAACAACCGGTAGACGTCCGGGTGATGGC
ACGCGAAGGCAAGCCGCTCTTCACGGAATGGACCACCGGTGGCGTGACCATCACGGTGGAGAGCGAGGCGCTGCTGGGCG
AGGCGCGGAATCGCGCAATCGACGAGGAATACCTGCGCGCACAGTTGGGACGGCTGGGGAACACAGCGTACGAACTGGGC
GCACTGACGCTGGAGATCACGGGTGCGCCGTTCGCGCCGAGCTCAATGTTGAATCAACTGCGGCGCGATGCGGTGGAGCA
ACTGCAGGCCGCCCAGGGTGCGGCAGCGATCCGCGAAGTCCACCCATTACCCGCGATGGCGGTCGCAATTCCGCCGGCGA
CTCGCGCCTCGACGGCATCGCTGCATCTTCTGGTGCGCACGGCGGAGCAATTGGACGCCGCGCTCGAACTCGCGCCGGAT
TCGATCACGCTCGACTATCTCGATCTCTACGGCCTGCGCCCCTCGATCGAGCGCGTGCGGCAGGCCGGCATCGCGGTGCG
CGTGGCCAGCCCGCGTGTGCTGAAGCCGGGCGAAGAAAAGATCGTCGATTTTCTCCTTGGGTGCGATTGCCCGATCCTGG
TGCGGTCCACCGGCTTGCTCCAGGCGCTGCGCCATCGCGAGGCGCGCGAGTTGACGGGCGATTTCAGCCTCAATGCGGCC
AACGCGCTCACCGCGAGGGAATTTTTCGCGCTCGGTTTGACGGCGCTGACTCCCACGTACGATCTGAATGCGGCGCAAGT
GGCGGAGCTCGCGCGTGAAGTCGGCGGCGAGCGCGTCGAGGCCGTCGCGTACCAGCACCTGCCCGTGTTTCACACCGAGC
ATTGCGTATTTTGCCGCTTTCTCTCTACAGGCACGAGCTATCGCGATTGCGGCCGGCCTTGCGAAGAGCATCGCGTGGCG
CTGCGCGACACCGCGGGCCGTGCTCACCCGGTGATGGCGGACGTAGGCTGCCGCAATACGGTGTTCGGCGCGGAAGCCCA
GGAAGCCAGCCTGCACCTGGAGGACTGGCGCGCGGCAGGCATCGCGCGATATCGGCTGGAGTTCGCGCACGAGTCGGCGG
AGCAGGTGACGGCCGTAACCCGCGCGTTCATCGAGGCGCTGGCGGGAAAGATCGGCGCGCGTGAACTCATGCAGCGGTTG
CAAAAGATCACGCCGCAGGGGATTACGCAGGGCAGCTTCTTCATTCCGGAGAATTACTTGACGCTGCCCGTGCTGCAGTA
G

Upstream 100 bases:

>100_bases
TTTCTTGTCGAGCATGGAAGAGTTTTACCTCCGAAAATACTATACACCCACTCAGAGGTGGAGAATAGGGGAAGAACGGT
ACACTGGTGGGTAGTCCTCT

Downstream 100 bases:

>100_bases
GGCGGGTTATCTACGCCAGCGCGTTCTTGCAGTACTCAACGCACTTGGCGATTTCGGTGAGCACGTCGGAGCCGGCGGGT
ACCGGGTACTCGAACTCGAT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 826; Mature: 826

Protein sequence:

>826_residues
MLFPRRKPEVMTPAGYWPQLRAAMEAGADAVYFGLKHFSARAKVGFSLEELPEVMATLHRRGVKGFVTFNTLVFRHELDE
AARALAQIAEAGADAIIVQDVGIVRMAREIAPGLELHGSTQMSVTSADGVRLAQSFGVHRVTLARELSLAEVRAIREATD
CELEIFVHGALCVAYSGQCFSSEAWGGRSANRGQCAQACRLPYEMLVDGKVKPLADARYLLSPGDLYALHQVPEIVDIGI
STLKIEGRYKDADYVALTTAAYRQAVDEAWAGRKPRIDAATELRLEQVYSRGLGAHFVTGTNHQAVVRGRAPRHRGVLMG
RVARITEKGVVITPAEAQRIAPLKPGDGVVFDAADWRTPEEAEEGGRIFEIDRGELRFGNGVVNTSRIRPGDLVWRTHDP
DLDKLVRMYTEAAAPLRKQPVDVRVMAREGKPLFTEWTTGGVTITVESEALLGEARNRAIDEEYLRAQLGRLGNTAYELG
ALTLEITGAPFAPSSMLNQLRRDAVEQLQAAQGAAAIREVHPLPAMAVAIPPATRASTASLHLLVRTAEQLDAALELAPD
SITLDYLDLYGLRPSIERVRQAGIAVRVASPRVLKPGEEKIVDFLLGCDCPILVRSTGLLQALRHREARELTGDFSLNAA
NALTAREFFALGLTALTPTYDLNAAQVAELAREVGGERVEAVAYQHLPVFHTEHCVFCRFLSTGTSYRDCGRPCEEHRVA
LRDTAGRAHPVMADVGCRNTVFGAEAQEASLHLEDWRAAGIARYRLEFAHESAEQVTAVTRAFIEALAGKIGARELMQRL
QKITPQGITQGSFFIPENYLTLPVLQ

Sequences:

>Translated_826_residues
MLFPRRKPEVMTPAGYWPQLRAAMEAGADAVYFGLKHFSARAKVGFSLEELPEVMATLHRRGVKGFVTFNTLVFRHELDE
AARALAQIAEAGADAIIVQDVGIVRMAREIAPGLELHGSTQMSVTSADGVRLAQSFGVHRVTLARELSLAEVRAIREATD
CELEIFVHGALCVAYSGQCFSSEAWGGRSANRGQCAQACRLPYEMLVDGKVKPLADARYLLSPGDLYALHQVPEIVDIGI
STLKIEGRYKDADYVALTTAAYRQAVDEAWAGRKPRIDAATELRLEQVYSRGLGAHFVTGTNHQAVVRGRAPRHRGVLMG
RVARITEKGVVITPAEAQRIAPLKPGDGVVFDAADWRTPEEAEEGGRIFEIDRGELRFGNGVVNTSRIRPGDLVWRTHDP
DLDKLVRMYTEAAAPLRKQPVDVRVMAREGKPLFTEWTTGGVTITVESEALLGEARNRAIDEEYLRAQLGRLGNTAYELG
ALTLEITGAPFAPSSMLNQLRRDAVEQLQAAQGAAAIREVHPLPAMAVAIPPATRASTASLHLLVRTAEQLDAALELAPD
SITLDYLDLYGLRPSIERVRQAGIAVRVASPRVLKPGEEKIVDFLLGCDCPILVRSTGLLQALRHREARELTGDFSLNAA
NALTAREFFALGLTALTPTYDLNAAQVAELAREVGGERVEAVAYQHLPVFHTEHCVFCRFLSTGTSYRDCGRPCEEHRVA
LRDTAGRAHPVMADVGCRNTVFGAEAQEASLHLEDWRAAGIARYRLEFAHESAEQVTAVTRAFIEALAGKIGARELMQRL
QKITPQGITQGSFFIPENYLTLPVLQ
>Mature_826_residues
MLFPRRKPEVMTPAGYWPQLRAAMEAGADAVYFGLKHFSARAKVGFSLEELPEVMATLHRRGVKGFVTFNTLVFRHELDE
AARALAQIAEAGADAIIVQDVGIVRMAREIAPGLELHGSTQMSVTSADGVRLAQSFGVHRVTLARELSLAEVRAIREATD
CELEIFVHGALCVAYSGQCFSSEAWGGRSANRGQCAQACRLPYEMLVDGKVKPLADARYLLSPGDLYALHQVPEIVDIGI
STLKIEGRYKDADYVALTTAAYRQAVDEAWAGRKPRIDAATELRLEQVYSRGLGAHFVTGTNHQAVVRGRAPRHRGVLMG
RVARITEKGVVITPAEAQRIAPLKPGDGVVFDAADWRTPEEAEEGGRIFEIDRGELRFGNGVVNTSRIRPGDLVWRTHDP
DLDKLVRMYTEAAAPLRKQPVDVRVMAREGKPLFTEWTTGGVTITVESEALLGEARNRAIDEEYLRAQLGRLGNTAYELG
ALTLEITGAPFAPSSMLNQLRRDAVEQLQAAQGAAAIREVHPLPAMAVAIPPATRASTASLHLLVRTAEQLDAALELAPD
SITLDYLDLYGLRPSIERVRQAGIAVRVASPRVLKPGEEKIVDFLLGCDCPILVRSTGLLQALRHREARELTGDFSLNAA
NALTAREFFALGLTALTPTYDLNAAQVAELAREVGGERVEAVAYQHLPVFHTEHCVFCRFLSTGTSYRDCGRPCEEHRVA
LRDTAGRAHPVMADVGCRNTVFGAEAQEASLHLEDWRAAGIARYRLEFAHESAEQVTAVTRAFIEALAGKIGARELMQRL
QKITPQGITQGSFFIPENYLTLPVLQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=533, Percent_Identity=33.2082551594747, Blast_Score=264, Evalue=2e-71,
Organism=Escherichia coli, GI1788397, Length=344, Percent_Identity=33.1395348837209, Blast_Score=153, Evalue=4e-38,
Organism=Escherichia coli, GI1789548, Length=295, Percent_Identity=32.2033898305085, Blast_Score=134, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 90388; Mature: 90388

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFPRRKPEVMTPAGYWPQLRAAMEAGADAVYFGLKHFSARAKVGFSLEELPEVMATLHR
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHCCHHHCCCCHHHHHHHHHHHHH
RGVKGFVTFNTLVFRHELDEAARALAQIAEAGADAIIVQDVGIVRMAREIAPGLELHGST
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEECCCC
QMSVTSADGVRLAQSFGVHRVTLARELSLAEVRAIREATDCELEIFVHGALCVAYSGQCF
EEEEECCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCC
SSEAWGGRSANRGQCAQACRLPYEMLVDGKVKPLADARYLLSPGDLYALHQVPEIVDIGI
CCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCEEECCCCEEEHHHCCHHHHCCC
STLKIEGRYKDADYVALTTAAYRQAVDEAWAGRKPRIDAATELRLEQVYSRGLGAHFVTG
EEEEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
TNHQAVVRGRAPRHRGVLMGRVARITEKGVVITPAEAQRIAPLKPGDGVVFDAADWRTPE
CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCH
EAEEGGRIFEIDRGELRFGNGVVNTSRIRPGDLVWRTHDPDLDKLVRMYTEAAAPLRKQP
HHHHCCCEEEECCCCEEECCCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHCCC
VDVRVMAREGKPLFTEWTTGGVTITVESEALLGEARNRAIDEEYLRAQLGRLGNTAYELG
CCEEEEEECCCEEEEEECCCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEC
ALTLEITGAPFAPSSMLNQLRRDAVEQLQAAQGAAAIREVHPLPAMAVAIPPATRASTAS
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
LHLLVRTAEQLDAALELAPDSITLDYLDLYGLRPSIERVRQAGIAVRVASPRVLKPGEEK
HHHEEHHHHHHHHHHHCCCCCEEEEHHHHCCCCHHHHHHHHCCEEEEECCCCCCCCCHHH
IVDFLLGCDCPILVRSTGLLQALRHREARELTGDFSLNAANALTAREFFALGLTALTPTY
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
DLNAAQVAELAREVGGERVEAVAYQHLPVFHTEHCVFCRFLSTGTSYRDCGRPCEEHRVA
CCCHHHHHHHHHHHCCHHHHHHHHHCCCEEECCHHHHHHHHHCCCCHHHHCCCHHHHCCH
LRDTAGRAHPVMADVGCRNTVFGAEAQEASLHLEDWRAAGIARYRLEFAHESAEQVTAVT
HHHCCCCCCCEEECCCCCCCCCCCCCHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAFIEALAGKIGARELMQRLQKITPQGITQGSFFIPENYLTLPVLQ
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCCC
>Mature Secondary Structure
MLFPRRKPEVMTPAGYWPQLRAAMEAGADAVYFGLKHFSARAKVGFSLEELPEVMATLHR
CCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHCCHHHCCCCHHHHHHHHHHHHH
RGVKGFVTFNTLVFRHELDEAARALAQIAEAGADAIIVQDVGIVRMAREIAPGLELHGST
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEECCCC
QMSVTSADGVRLAQSFGVHRVTLARELSLAEVRAIREATDCELEIFVHGALCVAYSGQCF
EEEEECCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCCC
SSEAWGGRSANRGQCAQACRLPYEMLVDGKVKPLADARYLLSPGDLYALHQVPEIVDIGI
CCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCEEECCCCEEEHHHCCHHHHCCC
STLKIEGRYKDADYVALTTAAYRQAVDEAWAGRKPRIDAATELRLEQVYSRGLGAHFVTG
EEEEEECCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
TNHQAVVRGRAPRHRGVLMGRVARITEKGVVITPAEAQRIAPLKPGDGVVFDAADWRTPE
CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEECCCCCCCCH
EAEEGGRIFEIDRGELRFGNGVVNTSRIRPGDLVWRTHDPDLDKLVRMYTEAAAPLRKQP
HHHHCCCEEEECCCCEEECCCCEECCCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHCCC
VDVRVMAREGKPLFTEWTTGGVTITVESEALLGEARNRAIDEEYLRAQLGRLGNTAYELG
CCEEEEEECCCEEEEEECCCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEC
ALTLEITGAPFAPSSMLNQLRRDAVEQLQAAQGAAAIREVHPLPAMAVAIPPATRASTAS
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHH
LHLLVRTAEQLDAALELAPDSITLDYLDLYGLRPSIERVRQAGIAVRVASPRVLKPGEEK
HHHEEHHHHHHHHHHHCCCCCEEEEHHHHCCCCHHHHHHHHCCEEEEECCCCCCCCCHHH
IVDFLLGCDCPILVRSTGLLQALRHREARELTGDFSLNAANALTAREFFALGLTALTPTY
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
DLNAAQVAELAREVGGERVEAVAYQHLPVFHTEHCVFCRFLSTGTSYRDCGRPCEEHRVA
CCCHHHHHHHHHHHCCHHHHHHHHHCCCEEECCHHHHHHHHHCCCCHHHHCCCHHHHCCH
LRDTAGRAHPVMADVGCRNTVFGAEAQEASLHLEDWRAAGIARYRLEFAHESAEQVTAVT
HHHCCCCCCCEEECCCCCCCCCCCCCHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAFIEALAGKIGARELMQRLQKITPQGITQGSFFIPENYLTLPVLQ
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCEECCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]