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The map label for this gene is hupD [H]

Identifier: 116625612

GI number: 116625612

Start: 8223168

End: 8223626

Strand: Direct

Name: hupD [H]

Synonym: Acid_6561

Alternate gene names: 116625612

Gene position: 8223168-8223626 (Clockwise)

Preceding gene: 116625611

Following gene: 116625613

Centisome position: 82.52

GC content: 65.58

Gene sequence:

>459_bases
ATGAGCGCGCGCGTGCTGGTGGCCGGCGTCGGCAACATCTTTCTGGGAGACGACGCGTTCGGCTCGGAAGTGGCACGGCG
AATGTTGAACGAGAAGTGGCCAGAGGACGTGCGCGTAGTGGACTTCGGGATTCGCGGCTTCGACCTGACCTTCGCGCTGC
TCGAGGGATACGACACCGTGATCCTGGTGGACGCGACGCCGCGCGGCGGGGCGCCCGGCACGCTGTACACCATCGAGCCC
GAGTTGGATGACGGTGAAGCTGGCGAGGTAGCGACTCACGGGATGAACCCGATGCGGGTCCTGGCGATGGCAAAGCACAT
GGGCGCGGAGTGGAAGCGGCTGCTGGTGGTGGGCTGCGAGCCTGCACATGATGCGGTGAACGATGGCGGCATCGGTTTGA
GCGAAGCAGTGCGTCCGGCGGTGGCGGAGGCGGTGGAAGTGGTCCGGAGGTTGATATGA

Upstream 100 bases:

>100_bases
TCGCGGTGGTGCTGGAGGACGATCCGGGGCGGGAGCTGGGATGGCTGCGGCAGCCGGGCCATCGTTTCTTCTTCAGTGCG
GAAGAAGTGGAGTTGGCGCC

Downstream 100 bases:

>100_bases
AAGTGGATGTCGGCAAACTCAGTAAAACCTTGGGCAGCATGGTTTTGGGGCTGATCGCTTTGGGTATGATCATGAACGCC
AAGGACATCAGACGCTACGT

Product: hydrogenase maturation protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MSARVLVAGVGNIFLGDDAFGSEVARRMLNEKWPEDVRVVDFGIRGFDLTFALLEGYDTVILVDATPRGGAPGTLYTIEP
ELDDGEAGEVATHGMNPMRVLAMAKHMGAEWKRLLVVGCEPAHDAVNDGGIGLSEAVRPAVAEAVEVVRRLI

Sequences:

>Translated_152_residues
MSARVLVAGVGNIFLGDDAFGSEVARRMLNEKWPEDVRVVDFGIRGFDLTFALLEGYDTVILVDATPRGGAPGTLYTIEP
ELDDGEAGEVATHGMNPMRVLAMAKHMGAEWKRLLVVGCEPAHDAVNDGGIGLSEAVRPAVAEAVEVVRRLI
>Mature_151_residues
SARVLVAGVGNIFLGDDAFGSEVARRMLNEKWPEDVRVVDFGIRGFDLTFALLEGYDTVILVDATPRGGAPGTLYTIEPE
LDDGEAGEVATHGMNPMRVLAMAKHMGAEWKRLLVVGCEPAHDAVNDGGIGLSEAVRPAVAEAVEVVRRLI

Specific function: Not known. Could be involved in the processing of hydrogenase [H]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1787209, Length=138, Percent_Identity=34.7826086956522, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 16259; Mature: 16128

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSARVLVAGVGNIFLGDDAFGSEVARRMLNEKWPEDVRVVDFGIRGFDLTFALLEGYDTV
CCCEEEEEECCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCEE
ILVDATPRGGAPGTLYTIEPELDDGEAGEVATHGMNPMRVLAMAKHMGAEWKRLLVVGCE
EEEECCCCCCCCCEEEEECCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCEEEEEECCC
PAHDAVNDGGIGLSEAVRPAVAEAVEVVRRLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SARVLVAGVGNIFLGDDAFGSEVARRMLNEKWPEDVRVVDFGIRGFDLTFALLEGYDTV
CCEEEEEECCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCEE
ILVDATPRGGAPGTLYTIEPELDDGEAGEVATHGMNPMRVLAMAKHMGAEWKRLLVVGCE
EEEECCCCCCCCCEEEEECCCCCCCCCCCEECCCCCHHHHHHHHHHCCCCCEEEEEECCC
PAHDAVNDGGIGLSEAVRPAVAEAVEVVRRLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Ni [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8497190 [H]