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The map label for this gene is hypD2 [H]

Identifier: 116625603

GI number: 116625603

Start: 8214717

End: 8215826

Strand: Direct

Name: hypD2 [H]

Synonym: Acid_6552

Alternate gene names: 116625603

Gene position: 8214717-8215826 (Clockwise)

Preceding gene: 116625602

Following gene: 116625604

Centisome position: 82.43

GC content: 63.78

Gene sequence:

>1110_bases
ATGAAGTACCTTGACGAGTACCGCGACGACCGGATCGCGAAGAAGGTGGTGGACGAGATCCGGCGGACGGTCACGCGGCC
GTGGGTGATTATGGAGGTCTGCGGCGGGCAGACGCATTCGATCGTGAAATACGGGATCGACTACCTGCTGCCGCCGGAGA
TCGAGCTGGTGCACGGGCCCGGCTGCCCGGTTTGCGTAACGCCGCTAGACATGATCGATCGCGCGCACGCGATCGCGCGG
CGGCCCGACGTGATCTTCTGCTCTTTCGGCGACATGCTGCGCGTGCCGGGTTCGGAGGGCGATCTCTTCCAGGTGCGGGC
GGCGGGCGGCAGCGTGCGCATTGTCTACTCGCCAATGGACTGCTTGAACATCGCGCAGCAGAACCCGGAAAAGCAGGTCG
TGTTCTTCGCGATCGGATTCGAGACTACGGCGCCGGCGAATGCCATGGCGGTTTCCCGTGCGAAAGCGCTGGGGCTGCGG
AACTTTTCGCTGCTGGTTTCGCACGTAGTGGTGCCCCCTTCGATGACCGGGATTCTGCAATCGCCGGGGAATCGCGTACA
GGGATTCCTGGGACCTGGACACGTGTGCGCGGTGATGGGCTGGAGCGAGTACGAGCCGATCGCGGCACGCTATGGGACGC
CGATCGTCATCACGGGCTTCGAACCTGTGGACCTGCTGGAAGGCATTCTGCTGACGGTGCGGCAGTTGGAGCAGGGTCGC
GCCGAGGTGGAGAATCAATATCCGCGCGCGGTATCGCGAGAGGGTAACGTTGCGGCGCGGAGGATGATCGCAGAGGTGTT
TGACGTGGCGGACCGCAGCTGGCGAGGCATTGGGATCATACCGAAGAGCGGCTACAAGCTGGGCTATGCCTTCCGCGAGT
ACGATGCGGACCGAATTTTCGAAGTGCAACACATTCGCACGCGTGAGCCGGAGATCTGCATTAGCGGGCAGGTGCTGAGG
GGGCTGAAGAAGCCGGTGGACTGTCCTGCGTTTGGAGCGCAGTGCTCGCCGCAGACGCCGCTGGGAGCGACGATGGTGTC
GGCGGAGGGCGCGTGCGCGGCGTACTACAACTACGGGCGGCATCTGGTATCGATCGCAGCGGAGGCGTGA

Upstream 100 bases:

>100_bases
GATGAGGAAGAGGCGGCGCGCACCTACCGTTACCTTGAGGAAATGGGTCAGCTCAGCGAGGTGACTTCCGCGGACATCGA
TACCGCGCCGGAGGCCGGCG

Downstream 100 bases:

>100_bases
GTGGCGGCACCGGCGTCGAAGGCTTTCCAGGAGGCGGTGTTGCGCAAATGCCGGGAGAGCGCCGAGACGAAGGAGAAATT
TTTCGCGGCGAATTCCGGCG

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MKYLDEYRDDRIAKKVVDEIRRTVTRPWVIMEVCGGQTHSIVKYGIDYLLPPEIELVHGPGCPVCVTPLDMIDRAHAIAR
RPDVIFCSFGDMLRVPGSEGDLFQVRAAGGSVRIVYSPMDCLNIAQQNPEKQVVFFAIGFETTAPANAMAVSRAKALGLR
NFSLLVSHVVVPPSMTGILQSPGNRVQGFLGPGHVCAVMGWSEYEPIAARYGTPIVITGFEPVDLLEGILLTVRQLEQGR
AEVENQYPRAVSREGNVAARRMIAEVFDVADRSWRGIGIIPKSGYKLGYAFREYDADRIFEVQHIRTREPEICISGQVLR
GLKKPVDCPAFGAQCSPQTPLGATMVSAEGACAAYYNYGRHLVSIAAEA

Sequences:

>Translated_369_residues
MKYLDEYRDDRIAKKVVDEIRRTVTRPWVIMEVCGGQTHSIVKYGIDYLLPPEIELVHGPGCPVCVTPLDMIDRAHAIAR
RPDVIFCSFGDMLRVPGSEGDLFQVRAAGGSVRIVYSPMDCLNIAQQNPEKQVVFFAIGFETTAPANAMAVSRAKALGLR
NFSLLVSHVVVPPSMTGILQSPGNRVQGFLGPGHVCAVMGWSEYEPIAARYGTPIVITGFEPVDLLEGILLTVRQLEQGR
AEVENQYPRAVSREGNVAARRMIAEVFDVADRSWRGIGIIPKSGYKLGYAFREYDADRIFEVQHIRTREPEICISGQVLR
GLKKPVDCPAFGAQCSPQTPLGATMVSAEGACAAYYNYGRHLVSIAAEA
>Mature_369_residues
MKYLDEYRDDRIAKKVVDEIRRTVTRPWVIMEVCGGQTHSIVKYGIDYLLPPEIELVHGPGCPVCVTPLDMIDRAHAIAR
RPDVIFCSFGDMLRVPGSEGDLFQVRAAGGSVRIVYSPMDCLNIAQQNPEKQVVFFAIGFETTAPANAMAVSRAKALGLR
NFSLLVSHVVVPPSMTGILQSPGNRVQGFLGPGHVCAVMGWSEYEPIAARYGTPIVITGFEPVDLLEGILLTVRQLEQGR
AEVENQYPRAVSREGNVAARRMIAEVFDVADRSWRGIGIIPKSGYKLGYAFREYDADRIFEVQHIRTREPEICISGQVLR
GLKKPVDCPAFGAQCSPQTPLGATMVSAEGACAAYYNYGRHLVSIAAEA

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=371, Percent_Identity=46.0916442048518, Blast_Score=353, Evalue=7e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 40528; Mature: 40528

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYLDEYRDDRIAKKVVDEIRRTVTRPWVIMEVCGGQTHSIVKYGIDYLLPPEIELVHGP
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCHHHCCCCCEEEEECC
GCPVCVTPLDMIDRAHAIARRPDVIFCSFGDMLRVPGSEGDLFQVRAAGGSVRIVYSPMD
CCCEEECCHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCEEEEEECCCEEEEEECCHH
CLNIAQQNPEKQVVFFAIGFETTAPANAMAVSRAKALGLRNFSLLVSHVVVPPSMTGILQ
HHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHC
SPGNRVQGFLGPGHVCAVMGWSEYEPIAARYGTPIVITGFEPVDLLEGILLTVRQLEQGR
CCCCCEECCCCCCEEEEEECCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
AEVENQYPRAVSREGNVAARRMIAEVFDVADRSWRGIGIIPKSGYKLGYAFREYDADRIF
HHHHHCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEHHHHCCCCCEE
EVQHIRTREPEICISGQVLRGLKKPVDCPAFGAQCSPQTPLGATMVSAEGACAAYYNYGR
EEHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHCH
HLVSIAAEA
HEEEEECCC
>Mature Secondary Structure
MKYLDEYRDDRIAKKVVDEIRRTVTRPWVIMEVCGGQTHSIVKYGIDYLLPPEIELVHGP
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCHHHCCCCCEEEEECC
GCPVCVTPLDMIDRAHAIARRPDVIFCSFGDMLRVPGSEGDLFQVRAAGGSVRIVYSPMD
CCCEEECCHHHHHHHHHHHCCCCEEEEECCCEEECCCCCCCEEEEEECCCEEEEEECCHH
CLNIAQQNPEKQVVFFAIGFETTAPANAMAVSRAKALGLRNFSLLVSHVVVPPSMTGILQ
HHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHC
SPGNRVQGFLGPGHVCAVMGWSEYEPIAARYGTPIVITGFEPVDLLEGILLTVRQLEQGR
CCCCCEECCCCCCEEEEEECCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHH
AEVENQYPRAVSREGNVAARRMIAEVFDVADRSWRGIGIIPKSGYKLGYAFREYDADRIF
HHHHHCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEHHHHCCCCCEE
EVQHIRTREPEICISGQVLRGLKKPVDCPAFGAQCSPQTPLGATMVSAEGACAAYYNYGR
EEHHHCCCCCCEEECHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHCH
HLVSIAAEA
HEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]