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The map label for this gene is rfaC [H]

Identifier: 116625438

GI number: 116625438

Start: 7999500

End: 8000444

Strand: Direct

Name: rfaC [H]

Synonym: Acid_6383

Alternate gene names: 116625438

Gene position: 7999500-8000444 (Clockwise)

Preceding gene: 116625437

Following gene: 116625439

Centisome position: 80.27

GC content: 68.57

Gene sequence:

>945_bases
ATGGGCGACATCATCCACACCTTGCCCGCCGCCGCCTGGCTCAAGCAGAGCCACCCCGGCTCGCACCTCACGTGGCTGGT
GGAACCCCAATGGGCGCCGCTTCTCGAAGGCAACCCGTACATCGATCGGGTGGTCGCGATGCGGCGCAGGAACTTCGCCG
GCCTGGTAGAAACGCGCCGCGAACTGCGCACCGCGCGCTACGATTTCGCCGTCGATTTTCAGGGCCTCATCAAGTCCGCG
CTGGCCGCCAGCGCCGCCCACCCCGACCGCATTTACGGCTTTCATCAGTCCCAGGTACGCGAGCGCGTGGCCGCCCTCTT
CTATTCCCACAAGACGCTGGCCCGCGCCGTCCACATTGTGGATCGCAACATGGAACTCGCCGCGGCCTGCGGCGGCCCCG
GCGGCGATCGCGCGCCGCGAAATTTCCCCATTCCCTCCGGCCGCGCTGAAAGCGATCTCCCCGACGGCGATTTCGTGCTC
GCCTCCCCACTCGCCGGCTGGAACAGCAAGCAGTGGCCCCTCGATCACTACCGCGAACTCGCCGAGCGCCTGCGCAGTGA
ACTCGGCATTCCCCTCGTGCTCGATGGACCTCCGGGCGCGAATTTCGCCGCCGCCGGCGCGCTCCCTCACCACTCCAGCC
TCGCCGGATTGATCTACGCCACGCGCCGCGCCGCCGCCGTCGTCGGCGTGGATAGCGGGCCGCTGCATCTTGCCGCCGCG
CTCGGCAGGCCCGGCATCGCCATCTTCGGCCCTACCGACCCGGCGCGCAACGGCCCGTACGGCGAATCGCTCCGCATCCT
CCGCGCCCCCGGCGCGCCTACAACTTATAAGCGCGGTTCATCGATCCATCCCAGCATGCAGCAGATCTCCCCAGACCAGG
TCTTCGAAGTCCTCAGAGTCGTCCTCCAGGAGCGACGCCGCCCCGCGGGAAGCCTGGCCGAATGA

Upstream 100 bases:

>100_bases
CTGGAAGCGGCCCACGCAGATCGCAGACGGCAGTTGATGGAGCATGTACACAGCCGGCAAACCAGCTAGCACCCACATCC
TCGCCGTGCGGCTCGGCGCC

Downstream 100 bases:

>100_bases
TCGAATTCCCCAAGCCTTATGCCGACGCCGTCGCGCGTCTTCGCGTCCCCAGCGGCTTCCTGATCGTCATTGTCTTCGCC
TGGTTTTCCCGGCCCACGCC

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MGDIIHTLPAAAWLKQSHPGSHLTWLVEPQWAPLLEGNPYIDRVVAMRRRNFAGLVETRRELRTARYDFAVDFQGLIKSA
LAASAAHPDRIYGFHQSQVRERVAALFYSHKTLARAVHIVDRNMELAAACGGPGGDRAPRNFPIPSGRAESDLPDGDFVL
ASPLAGWNSKQWPLDHYRELAERLRSELGIPLVLDGPPGANFAAAGALPHHSSLAGLIYATRRAAAVVGVDSGPLHLAAA
LGRPGIAIFGPTDPARNGPYGESLRILRAPGAPTTYKRGSSIHPSMQQISPDQVFEVLRVVLQERRRPAGSLAE

Sequences:

>Translated_314_residues
MGDIIHTLPAAAWLKQSHPGSHLTWLVEPQWAPLLEGNPYIDRVVAMRRRNFAGLVETRRELRTARYDFAVDFQGLIKSA
LAASAAHPDRIYGFHQSQVRERVAALFYSHKTLARAVHIVDRNMELAAACGGPGGDRAPRNFPIPSGRAESDLPDGDFVL
ASPLAGWNSKQWPLDHYRELAERLRSELGIPLVLDGPPGANFAAAGALPHHSSLAGLIYATRRAAAVVGVDSGPLHLAAA
LGRPGIAIFGPTDPARNGPYGESLRILRAPGAPTTYKRGSSIHPSMQQISPDQVFEVLRVVLQERRRPAGSLAE
>Mature_313_residues
GDIIHTLPAAAWLKQSHPGSHLTWLVEPQWAPLLEGNPYIDRVVAMRRRNFAGLVETRRELRTARYDFAVDFQGLIKSAL
AASAAHPDRIYGFHQSQVRERVAALFYSHKTLARAVHIVDRNMELAAACGGPGGDRAPRNFPIPSGRAESDLPDGDFVLA
SPLAGWNSKQWPLDHYRELAERLRSELGIPLVLDGPPGANFAAAGALPHHSSLAGLIYATRRAAAVVGVDSGPLHLAAAL
GRPGIAIFGPTDPARNGPYGESLRILRAPGAPTTYKRGSSIHPSMQQISPDQVFEVLRVVLQERRRPAGSLAE

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=296, Percent_Identity=34.4594594594595, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1790050, Length=349, Percent_Identity=27.5071633237822, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 34042; Mature: 33911

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDIIHTLPAAAWLKQSHPGSHLTWLVEPQWAPLLEGNPYIDRVVAMRRRNFAGLVETRR
CCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
ELRTARYDFAVDFQGLIKSALAASAAHPDRIYGFHQSQVRERVAALFYSHKTLARAVHIV
HHHHHHHCCEECHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DRNMELAAACGGPGGDRAPRNFPIPSGRAESDLPDGDFVLASPLAGWNSKQWPLDHYREL
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHH
AERLRSELGIPLVLDGPPGANFAAAGALPHHSSLAGLIYATRRAAAVVGVDSGPLHLAAA
HHHHHHHCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHH
LGRPGIAIFGPTDPARNGPYGESLRILRAPGAPTTYKRGSSIHPSMQQISPDQVFEVLRV
CCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHH
VLQERRRPAGSLAE
HHHHHCCCCCCCCC
>Mature Secondary Structure 
GDIIHTLPAAAWLKQSHPGSHLTWLVEPQWAPLLEGNPYIDRVVAMRRRNFAGLVETRR
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
ELRTARYDFAVDFQGLIKSALAASAAHPDRIYGFHQSQVRERVAALFYSHKTLARAVHIV
HHHHHHHCCEECHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
DRNMELAAACGGPGGDRAPRNFPIPSGRAESDLPDGDFVLASPLAGWNSKQWPLDHYREL
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHH
AERLRSELGIPLVLDGPPGANFAAAGALPHHSSLAGLIYATRRAAAVVGVDSGPLHLAAA
HHHHHHHCCCEEEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHH
LGRPGIAIFGPTDPARNGPYGESLRILRAPGAPTTYKRGSSIHPSMQQISPDQVFEVLRV
CCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHH
VLQERRRPAGSLAE
HHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]