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The map label for this gene is ykgB [H]

Identifier: 116625390

GI number: 116625390

Start: 7952665

End: 7953789

Strand: Reverse

Name: ykgB [H]

Synonym: Acid_6335

Alternate gene names: 116625390

Gene position: 7953789-7952665 (Counterclockwise)

Preceding gene: 116625391

Following gene: 116625389

Centisome position: 79.81

GC content: 62.84

Gene sequence:

>1125_bases
ATGAAACTCGTTACCAGACTGCTGTTCTCCATGGTCGCGCTCTCGGCGGCCTTTGCTCAGACGAAGGGCGAATCCATCGT
CTACGCCGGCACCTACACGCGCCCCAACAAGAGCAAGGGAATTTATGCGTGGCGCTTCCAGCCGGCCACCGGCAAACTGA
CCGCCATCGGCCTCGTGGGCGAGACCGTCAGCCCCTCCTTCCTTGCCGTGCATCCGAATAAGAAGTTTCTCTACGCGGTC
AACGAAATTGGAAACTACAAGGGCGAAAAGGCGGGCTCCGTGACCGCGTTCGCGCTCGACGCGAAGACCGGGATGCTCAA
AGCGCTGAACACGGTATCGTCGCGCGGCGATGGACCCTGCCACCTCGCGATCGACCCCACCGGCAAATGGCTGATCGTCG
CCAACTACGGCGGCGGCAGCATCGCCGAATACCCCGTCCACGCCGATGGCACGCTCGGCGAAGCGTCCACCTTCATCCAG
CACAAAGGCTCCAGCGTGGATCCCGCGCGCCAGAAGGGTCCCCACGCCCATTCCACCGTTCTCTCTCCGGACGGCAAGCT
GGTCTTCGTCAATGATCTTGGGCTAGACGAGATTCTCTCGTACAAAGTCGATGGGCTCACGCCCGCCGATCCGCCGTTTA
CCAAGGTCGCCCCAGGCTCCGGCCCGCGCCACCTCGCGTTTGCTCCCAACGGCCGCTTCGCCTATGCCATCACCGAGATG
ACTGCCAGCGTGGTTGCTTTCCGTTACGCCGGCGGTAAGTTCGAGGAACTGCAGACCATACCTAACCTCTCCGAGCCTGT
CGCGGGAATGAGCGGCGCCGAAATCGCCGTGCACCCCACAGGCAAATTCGTCTACAGCTCCACGCGCGGCCATAACAGCA
TCTCCGTCTTCGCCGTTGACCCCGCCAAGGGCACCCTCACTTTCGTGGATCGCACGCCCACGCAGGGGAAGACGCCGCGC
AATTTCGCCATCGACCCGACCGGCGGCTATCTCTTCGCCGCCAATCAGGACTCTGACAACATCGTCGTCTTCAAGATCGA
CGCTAAGACCGGCAAGCTCACAGCCAGCGGCGACGTGCTCGAGGCCGGCAGCCCGGTCTGCGTCACTTTCGTCCCGGCGC
TGTAG

Upstream 100 bases:

>100_bases
TCCGCAGCACGGTCTGCCCCGAAGCTTACATCGATATGAAGATCGACCCGGGCAAGGAATTCACCTGGCGGATCGCTTAC
GATTTCTACACCTTAAAACC

Downstream 100 bases:

>100_bases
GGCGGACGCCAGCTTAGATCACAACAGCGACCACCAGCAGAGCCGCGCCGGAAAATCTCACGACCTTCCGCGCCCTACAC
GAAATCTCCGCGTACTCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MKLVTRLLFSMVALSAAFAQTKGESIVYAGTYTRPNKSKGIYAWRFQPATGKLTAIGLVGETVSPSFLAVHPNKKFLYAV
NEIGNYKGEKAGSVTAFALDAKTGMLKALNTVSSRGDGPCHLAIDPTGKWLIVANYGGGSIAEYPVHADGTLGEASTFIQ
HKGSSVDPARQKGPHAHSTVLSPDGKLVFVNDLGLDEILSYKVDGLTPADPPFTKVAPGSGPRHLAFAPNGRFAYAITEM
TASVVAFRYAGGKFEELQTIPNLSEPVAGMSGAEIAVHPTGKFVYSSTRGHNSISVFAVDPAKGTLTFVDRTPTQGKTPR
NFAIDPTGGYLFAANQDSDNIVVFKIDAKTGKLTASGDVLEAGSPVCVTFVPAL

Sequences:

>Translated_374_residues
MKLVTRLLFSMVALSAAFAQTKGESIVYAGTYTRPNKSKGIYAWRFQPATGKLTAIGLVGETVSPSFLAVHPNKKFLYAV
NEIGNYKGEKAGSVTAFALDAKTGMLKALNTVSSRGDGPCHLAIDPTGKWLIVANYGGGSIAEYPVHADGTLGEASTFIQ
HKGSSVDPARQKGPHAHSTVLSPDGKLVFVNDLGLDEILSYKVDGLTPADPPFTKVAPGSGPRHLAFAPNGRFAYAITEM
TASVVAFRYAGGKFEELQTIPNLSEPVAGMSGAEIAVHPTGKFVYSSTRGHNSISVFAVDPAKGTLTFVDRTPTQGKTPR
NFAIDPTGGYLFAANQDSDNIVVFKIDAKTGKLTASGDVLEAGSPVCVTFVPAL
>Mature_374_residues
MKLVTRLLFSMVALSAAFAQTKGESIVYAGTYTRPNKSKGIYAWRFQPATGKLTAIGLVGETVSPSFLAVHPNKKFLYAV
NEIGNYKGEKAGSVTAFALDAKTGMLKALNTVSSRGDGPCHLAIDPTGKWLIVANYGGGSIAEYPVHADGTLGEASTFIQ
HKGSSVDPARQKGPHAHSTVLSPDGKLVFVNDLGLDEILSYKVDGLTPADPPFTKVAPGSGPRHLAFAPNGRFAYAITEM
TASVVAFRYAGGKFEELQTIPNLSEPVAGMSGAEIAVHPTGKFVYSSTRGHNSISVFAVDPAKGTLTFVDRTPTQGKTPR
NFAIDPTGGYLFAANQDSDNIVVFKIDAKTGKLTASGDVLEAGSPVCVTFVPAL

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=332, Percent_Identity=27.4096385542169, Blast_Score=108, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 39344; Mature: 39344

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVTRLLFSMVALSAAFAQTKGESIVYAGTYTRPNKSKGIYAWRFQPATGKLTAIGLVG
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEC
ETVSPSFLAVHPNKKFLYAVNEIGNYKGEKAGSVTAFALDAKTGMLKALNTVSSRGDGPC
CCCCCCEEEECCCCEEEEEEEHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCE
HLAIDPTGKWLIVANYGGGSIAEYPVHADGTLGEASTFIQHKGSSVDPARQKGPHAHSTV
EEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCCCCEE
LSPDGKLVFVNDLGLDEILSYKVDGLTPADPPFTKVAPGSGPRHLAFAPNGRFAYAITEM
ECCCCCEEEEECCCHHHHHHEEECCCCCCCCCCCEECCCCCCCEEEECCCCCEEEEEHHH
TASVVAFRYAGGKFEELQTIPNLSEPVAGMSGAEIAVHPTGKFVYSSTRGHNSISVFAVD
HHEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEEEEC
PAKGTLTFVDRTPTQGKTPRNFAIDPTGGYLFAANQDSDNIVVFKIDAKTGKLTASGDVL
CCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCEE
EAGSPVCVTFVPAL
ECCCCEEEEEECCC
>Mature Secondary Structure
MKLVTRLLFSMVALSAAFAQTKGESIVYAGTYTRPNKSKGIYAWRFQPATGKLTAIGLVG
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCEEEEEEEC
ETVSPSFLAVHPNKKFLYAVNEIGNYKGEKAGSVTAFALDAKTGMLKALNTVSSRGDGPC
CCCCCCEEEECCCCEEEEEEEHHCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCE
HLAIDPTGKWLIVANYGGGSIAEYPVHADGTLGEASTFIQHKGSSVDPARQKGPHAHSTV
EEEECCCCCEEEEEECCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCHHHCCCCCCCEE
LSPDGKLVFVNDLGLDEILSYKVDGLTPADPPFTKVAPGSGPRHLAFAPNGRFAYAITEM
ECCCCCEEEEECCCHHHHHHEEECCCCCCCCCCCEECCCCCCCEEEECCCCCEEEEEHHH
TASVVAFRYAGGKFEELQTIPNLSEPVAGMSGAEIAVHPTGKFVYSSTRGHNSISVFAVD
HHEEEEEEECCCCHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCEEEEEEEC
PAKGTLTFVDRTPTQGKTPRNFAIDPTGGYLFAANQDSDNIVVFKIDAKTGKLTASGDVL
CCCCEEEEEECCCCCCCCCCCEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEECCCEE
EAGSPVCVTFVPAL
ECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]