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The map label for this gene is fimZ [H]

Identifier: 116625225

GI number: 116625225

Start: 7733293

End: 7733964

Strand: Direct

Name: fimZ [H]

Synonym: Acid_6170

Alternate gene names: 116625225

Gene position: 7733293-7733964 (Clockwise)

Preceding gene: 116625213

Following gene: 116625227

Centisome position: 77.6

GC content: 59.38

Gene sequence:

>672_bases
ATGTCAGCGGGCTATCACGTCCTAATTCTAGACGGGTACGCGCTCATGCGCGATATCTTGACCGACTTCCTGTTGAAAGA
GCCGGCGTGCCTGTCGGCCAAAGCCGTACCCGACGTCGTATCGGCGATCAGGCACATACAACAAGCCCCTGTCAGCTTGG
TTCTTCTGGACGATAACCTTCCGGGCGAACCGGCCAGCGCGTTTATGGAGCGTCTTGCCCGGCTTCCTTTCCATGTGCCG
GTGCTGGTCCTTTCATCCGGAATGAACCACTGCGCCGTAAGGCGCCTGCTGGGGCTCGGAGCCGCCGGAATCGTCTGGAA
TACCTCGACCATGAAAGACCTTTCCGCCTGTGTGGTAGAGGTTGCCCGAGGCGCCACCTGGAAAGACAACGCCTGTCTCG
AACGCGCCCTGGGCGGAGCTCCACGCCAGCTGCCTTCCTGGGCTATACCTTTCTCGGAACGCCAGGCCCAGGTTTTAAAG
GGTATTGCCGCCGCGCAAGCCAATAAGGAAATTGCAGCTCGCCTTGGAGTGTCCGAAACCTCGGTGAAATGCACCGTCCA
GCAGATCTTCGGAAAAACCGGAGTCCGTTCGCGATCGGAACTGGTCCGAGTCGTTATGGAACGCTTCCCGGAGACCTTCG
TCCCCGAAATGACCGACCCCGTTACCGGCTGA

Upstream 100 bases:

>100_bases
CTTCGGCGGACTTACCGGTTTGCATCGCACCCTACGGGTGCTATGCTCGGTTCTTCTCTAGCGTAGACTCACACTACCAT
TCTCGGAGGGATGGCAGACA

Downstream 100 bases:

>100_bases
TGCCGCCCGGCCGTGTTCCTTATGAGTTTTCGGCTGTAATAAATAGCGGGCATCCGCACTCCTCCACCGTACACTTATCG
AGAAATCTAGTCTCCCTATA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSAGYHVLILDGYALMRDILTDFLLKEPACLSAKAVPDVVSAIRHIQQAPVSLVLLDDNLPGEPASAFMERLARLPFHVP
VLVLSSGMNHCAVRRLLGLGAAGIVWNTSTMKDLSACVVEVARGATWKDNACLERALGGAPRQLPSWAIPFSERQAQVLK
GIAAAQANKEIAARLGVSETSVKCTVQQIFGKTGVRSRSELVRVVMERFPETFVPEMTDPVTG

Sequences:

>Translated_223_residues
MSAGYHVLILDGYALMRDILTDFLLKEPACLSAKAVPDVVSAIRHIQQAPVSLVLLDDNLPGEPASAFMERLARLPFHVP
VLVLSSGMNHCAVRRLLGLGAAGIVWNTSTMKDLSACVVEVARGATWKDNACLERALGGAPRQLPSWAIPFSERQAQVLK
GIAAAQANKEIAARLGVSETSVKCTVQQIFGKTGVRSRSELVRVVMERFPETFVPEMTDPVTG
>Mature_222_residues
SAGYHVLILDGYALMRDILTDFLLKEPACLSAKAVPDVVSAIRHIQQAPVSLVLLDDNLPGEPASAFMERLARLPFHVPV
LVLSSGMNHCAVRRLLGLGAAGIVWNTSTMKDLSACVVEVARGATWKDNACLERALGGAPRQLPSWAIPFSERQAQVLKG
IAAAQANKEIAARLGVSETSVKCTVQQIFGKTGVRSRSELVRVVMERFPETFVPEMTDPVTG

Specific function: Unknown

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786747, Length=196, Percent_Identity=26.530612244898, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788521, Length=201, Percent_Identity=28.3582089552239, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24046; Mature: 23915

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAGYHVLILDGYALMRDILTDFLLKEPACLSAKAVPDVVSAIRHIQQAPVSLVLLDDNL
CCCCCEEEEECCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHCCEEEEEECCCC
PGEPASAFMERLARLPFHVPVLVLSSGMNHCAVRRLLGLGAAGIVWNTSTMKDLSACVVE
CCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHH
VARGATWKDNACLERALGGAPRQLPSWAIPFSERQAQVLKGIAAAQANKEIAARLGVSET
HHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SVKCTVQQIFGKTGVRSRSELVRVVMERFPETFVPEMTDPVTG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCC
>Mature Secondary Structure 
SAGYHVLILDGYALMRDILTDFLLKEPACLSAKAVPDVVSAIRHIQQAPVSLVLLDDNL
CCCCEEEEECCHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHCCEEEEEECCCC
PGEPASAFMERLARLPFHVPVLVLSSGMNHCAVRRLLGLGAAGIVWNTSTMKDLSACVVE
CCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHH
VARGATWKDNACLERALGGAPRQLPSWAIPFSERQAQVLKGIAAAQANKEIAARLGVSET
HHCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SVKCTVQQIFGKTGVRSRSELVRVVMERFPETFVPEMTDPVTG
HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360005; 11677609 [H]