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The map label for this gene is rfaH [C]

Identifier: 116625224

GI number: 116625224

Start: 7731389

End: 7731970

Strand: Reverse

Name: rfaH [C]

Synonym: Acid_6169

Alternate gene names: 116625224

Gene position: 7731970-7731389 (Counterclockwise)

Preceding gene: 116625226

Following gene: 116625223

Centisome position: 77.59

GC content: 61.17

Gene sequence:

>582_bases
ATGTCAATTTGCGGTTCGCCTGACGATCAAGCGCAGTCAAACAGCGGGCTCCAGTGGTTTGCGCTCTCGGTGACGCCCAA
GCTCACGCAGCTGGTTCTGATGGCTCTCGAGCATAAAGGTTACGAATGCTTTACACCGCTGCAGTCGAGTACACGAAAGC
GGCGCGATCAGGTGGCCGACATGCAAGTGCCGGCTTTTCCAGGCTACGTGTTCGCCCGCATTGACGTGCGCTTCCGCTTG
CCGGTGCTGGTGACGCCGGGGGTGCGGGGCATCGTCGGATATGGCCGGCAACCCGCACCGGTAGACGACGGCGAGATTTT
CGCGCTCCGGCGGGTGATGCAGTCGCAGCTTCCCGCCAAATCCGCTCCTTATCTGAGAACCGGAGACCGGGTACAACTCG
TCGAAGGCCCCCTCAGCGGGTTGACCGGGCTGCTCATCCAGCAGAAGGGCGCAAATCGTGTCCTGGTGCAAGTCACGTTG
ATTAACCAGGCACTGGCCGTGGATGTGGAATCGGCCTGGGTGCGGTCGCTGGACGTCGAACCGGTTTGCCGTGTTCTCAG
TGCCGCACAGGGATGCTTCTAA

Upstream 100 bases:

>100_bases
TGACTCTGTTGCGGTTGCCGCTTATTCTGCTCTTGCGGCGAATTTTCGAGTTAGCCAAATGGCTTACTTGACAACTTAGA
GAGCCGCATGTGTGGTAACT

Downstream 100 bases:

>100_bases
ACGGCCGGTCGAGTAGCGCCCCTGTCGTGAGACCGAGGCCTGCCCGCAATAAACTCACCATCAGCCAGCCGACCAATCTG
GACAAGCCTGACTGAACGGA

Product: NusG antitermination factor

Products: NA

Alternate protein names: Transcription Antitermination Protein NusG; Transcriptional Activator RfaH; Transcription Termination Factor NusG Domain Protein; Transcriptional Antiterminator; Transcriptional Activator; NusG-Like Protein; NGN Domain Protein; Transcription Termination/Antitermination Factor NusG; Transcription Antiterminator; Transcription Antitermination Protein; Transcription Activator Protein

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSICGSPDDQAQSNSGLQWFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPGYVFARIDVRFRL
PVLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAKSAPYLRTGDRVQLVEGPLSGLTGLLIQQKGANRVLVQVTL
INQALAVDVESAWVRSLDVEPVCRVLSAAQGCF

Sequences:

>Translated_193_residues
MSICGSPDDQAQSNSGLQWFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPGYVFARIDVRFRL
PVLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAKSAPYLRTGDRVQLVEGPLSGLTGLLIQQKGANRVLVQVTL
INQALAVDVESAWVRSLDVEPVCRVLSAAQGCF
>Mature_192_residues
SICGSPDDQAQSNSGLQWFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPGYVFARIDVRFRLP
VLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAKSAPYLRTGDRVQLVEGPLSGLTGLLIQQKGANRVLVQVTLI
NQALAVDVESAWVRSLDVEPVCRVLSAAQGCF

Specific function: Transcriptional Activator Of Hemolysin Synthesis And Secretion, Also Required For Expression Of Sex Factor And Lipopolysaccharide Biosynthesis Genes. Transcriptional Activator Of Rfad/Htrm And Htrl. [C]

COG id: COG0250

COG function: function code K; Transcription antiterminator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21095; Mature: 20964

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSICGSPDDQAQSNSGLQWFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVAD
CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHC
MQVPAFPGYVFARIDVRFRLPVLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAK
CCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
SAPYLRTGDRVQLVEGPLSGLTGLLIQQKGANRVLVQVTLINQALAVDVESAWVRSLDVE
CCCCEECCCEEEEECCCHHHHHHHEEECCCCCEEEEEEEEECHHHEEEHHHHHHHCCCHH
PVCRVLSAAQGCF
HHHHHHHHHCCCC
>Mature Secondary Structure 
SICGSPDDQAQSNSGLQWFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVAD
CCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHC
MQVPAFPGYVFARIDVRFRLPVLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAK
CCCCCCCCEEEEEEEEEEEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
SAPYLRTGDRVQLVEGPLSGLTGLLIQQKGANRVLVQVTLINQALAVDVESAWVRSLDVE
CCCCEECCCEEEEECCCHHHHHHHEEECCCCCEEEEEEEEECHHHEEEHHHHHHHCCCHH
PVCRVLSAAQGCF
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA