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The map label for this gene is xerD [C]

Identifier: 116625160

GI number: 116625160

Start: 7631772

End: 7632677

Strand: Reverse

Name: xerD [C]

Synonym: Acid_6102

Alternate gene names: 116625160

Gene position: 7632677-7631772 (Counterclockwise)

Preceding gene: 116625162

Following gene: 116625159

Centisome position: 76.59

GC content: 63.8

Gene sequence:

>906_bases
GTGGGTCACAAGGAGGTCCCTGTGACCCAACTTCGCAAAATGGTGCTCGAGGAACTCGAGCGCCGTAATTACTCTCAAGC
TACCGCACGTCCCTACGTCGGCGCCATCCAGCGGTTCGCCGAACATTTCCATCGCTCGCCCGATCAACTTGGCCCCGAGC
ACATCCGCGAGTATCAACTACACCTCGTGCAGGACCGCAAACTGCATCCCAGGACCGTCATGATCCAGATGTCCGCGCTC
CGCTTCTTCTTCCGCAAGGTGCTGAAGCGGCGCTTTGATCGCGACGACCTGCCCTTGCCGAAACTTCTGCGCCGACAGAT
CCCCACGGTATTGAGCCGCGACGAAGTGGCACGACTCATCGCCGCGGCAGGCAACCTGCGTCATCGCACCATCCTGATGG
CGCTCTACGCCACCGGCATGCGGCGTGCCGAGCTCTGTCACTTGCGGATCGAGGACATTGACAAAGAACGCATGGTCCTC
CACATCCGCCAGGGCAAGGGCGGCAAGGACCGCGAGGTCCCACTCCCGCCGAAACTGCTCGCGCAACTTCGCATCCACTA
TCGCGCCCTGCCGCACCGGTCGGCGTGGGTCTTCCCCAGTCTGCAATCCCGACGCCCCGATCAGCCGATGACGGAAAAGG
CCGTCTGGCACGCCTGCCGCCAAGCCGCCTGGCGGGCCGGCATCACCAAGTCCGTCCATCCGCACACGCTCCGCCACTGC
TTCGCCACCCATCTGCTGGATAATGGTGCCGAACTGCCCGTCATTCAGGTGCTGCTGGGTCACAGCGATCCGCGCGACAC
CATGATCTACCTGCACCTCTGCACCCGGCAACTTCGCGCTGCCCCGAACCCGCTGGACACTCTCCCCTGTCCCAGCATCG
CCGGCCGCGAGCGTGCCACGTCATGA

Upstream 100 bases:

>100_bases
TCCTGACGCTTCCCAGAAGGCCGTTTGAACTAAGCCGCTCGCGCGGCGGACGCTACGCGTCAGGCCGGGGCTAGCGCCCA
TTCTTTGGTGGGAGTATTTT

Downstream 100 bases:

>100_bases
GCCGGCCCCTGCTAGAGGTGGCCGACATCTTCCGCGCCTACGCCGGACGCTTTCTCGAGCGCTGCCGCACCCGCATCTCC
TGGCCGCAGCATCAGGTCCT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MGHKEVPVTQLRKMVLEELERRNYSQATARPYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSAL
RFFFRKVLKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVL
HIRQGKGGKDREVPLPPKLLAQLRIHYRALPHRSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHC
FATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAAPNPLDTLPCPSIAGRERATS

Sequences:

>Translated_301_residues
MGHKEVPVTQLRKMVLEELERRNYSQATARPYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSAL
RFFFRKVLKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVL
HIRQGKGGKDREVPLPPKLLAQLRIHYRALPHRSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHC
FATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAAPNPLDTLPCPSIAGRERATS
>Mature_300_residues
GHKEVPVTQLRKMVLEELERRNYSQATARPYVGAIQRFAEHFHRSPDQLGPEHIREYQLHLVQDRKLHPRTVMIQMSALR
FFFRKVLKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLH
IRQGKGGKDREVPLPPKLLAQLRIHYRALPHRSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHCF
ATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAAPNPLDTLPCPSIAGRERATS

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=222, Percent_Identity=39.1891891891892, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790244, Length=227, Percent_Identity=29.9559471365639, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790767, Length=170, Percent_Identity=30, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34967; Mature: 34836

Theoretical pI: Translated: 11.20; Mature: 11.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHKEVPVTQLRKMVLEELERRNYSQATARPYVGAIQRFAEHFHRSPDQLGPEHIREYQL
CCCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
HLVQDRKLHPRTVMIQMSALRFFFRKVLKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLL
HHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHH
AQLRIHYRALPHRSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHC
HHHHHHHHHCCCCCCEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAAPNPLDTLPCPSIAGRERAT
HHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
S
C
>Mature Secondary Structure 
GHKEVPVTQLRKMVLEELERRNYSQATARPYVGAIQRFAEHFHRSPDQLGPEHIREYQL
CCCCCCHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
HLVQDRKLHPRTVMIQMSALRFFFRKVLKRRFDRDDLPLPKLLRRQIPTVLSRDEVARLI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
AAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHIRQGKGGKDREVPLPPKLL
HHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHH
AQLRIHYRALPHRSAWVFPSLQSRRPDQPMTEKAVWHACRQAAWRAGITKSVHPHTLRHC
HHHHHHHHHCCCCCCEECCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
FATHLLDNGAELPVIQVLLGHSDPRDTMIYLHLCTRQLRAAPNPLDTLPCPSIAGRERAT
HHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]