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The map label for this gene is ycfQ [H]

Identifier: 116625134

GI number: 116625134

Start: 7598734

End: 7599351

Strand: Reverse

Name: ycfQ [H]

Synonym: Acid_6071

Alternate gene names: 116625134

Gene position: 7599351-7598734 (Counterclockwise)

Preceding gene: 116625139

Following gene: 116625133

Centisome position: 76.26

GC content: 59.55

Gene sequence:

>618_bases
ATGGTAACTAATGCTGCTAAGCGCCCCCGAGGACGTCCAAAAGGCTTTATCCGCGACGAAGCACTCGACCGTGCCGTTGA
GATGTTTTGGGAGCACGGGTATGAAGGAGTCGACGTGGATCGGATCGCGAGCGCCGTGAACGTCACTAAACCTGCGCTAT
ACCGAGCCTTCGGAGACAAGCCCACCCTGCTGCTCAAGGCGGTCGAGCGTTATGCGATGACGTATGTGGCTCCCAGAATG
GCGGCTTTTCAAGCGGAGCCGGACATCCACAAGGCCGTCACCGCCTTTTGCGAGGCTACCGTCAACGCCGCTTCGAATGA
GGCTCGCGGCGGTTGCATGCTGGCCGCCGCTGCGGTGGGACAGTCTGAGCGAGTAGCCGAGATCCGCTTGTACGTCGCGA
CGGGCCTGACCGCAACCGCTGATGTTTTCGCCAAACGTTTCGAAAAGGAGATGAAGGCGGGGCGCCTAAGCAGAACACCC
TCTGCCAAGGTGCGAGGACGTTTGCTCGTTGACTTGGCGCAGGGTTTGCAGCTTCGCGGCAAGGTCGGCATTGGCCGCGA
GCAATTGCTGCAAGACGCCCGAAGCTATGTGCCCCTGATTCTTGGCAAGCAAATCTAA

Upstream 100 bases:

>100_bases
CTGGACCTTTCCCGGTTGTCTGCTGCATTTATCAGCCTTGAAGAATTACATACGCTAGAGTATGATAATCACAGCTGCAA
TGCAAGGAGTTTCGTACGCC

Downstream 100 bases:

>100_bases
CGCACCTCTCGGCGGGGATGAGTCTGGACGAGTGCCAAATCACCAGTGCACTCACAGACAACTGGTAACGATAGGTGTCT
CGTGGCGGGTTGTCACTCTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MVTNAAKRPRGRPKGFIRDEALDRAVEMFWEHGYEGVDVDRIASAVNVTKPALYRAFGDKPTLLLKAVERYAMTYVAPRM
AAFQAEPDIHKAVTAFCEATVNAASNEARGGCMLAAAAVGQSERVAEIRLYVATGLTATADVFAKRFEKEMKAGRLSRTP
SAKVRGRLLVDLAQGLQLRGKVGIGREQLLQDARSYVPLILGKQI

Sequences:

>Translated_205_residues
MVTNAAKRPRGRPKGFIRDEALDRAVEMFWEHGYEGVDVDRIASAVNVTKPALYRAFGDKPTLLLKAVERYAMTYVAPRM
AAFQAEPDIHKAVTAFCEATVNAASNEARGGCMLAAAAVGQSERVAEIRLYVATGLTATADVFAKRFEKEMKAGRLSRTP
SAKVRGRLLVDLAQGLQLRGKVGIGREQLLQDARSYVPLILGKQI
>Mature_205_residues
MVTNAAKRPRGRPKGFIRDEALDRAVEMFWEHGYEGVDVDRIASAVNVTKPALYRAFGDKPTLLLKAVERYAMTYVAPRM
AAFQAEPDIHKAVTAFCEATVNAASNEARGGCMLAAAAVGQSERVAEIRLYVATGLTATADVFAKRFEKEMKAGRLSRTP
SAKVRGRLLVDLAQGLQLRGKVGIGREQLLQDARSYVPLILGKQI

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=191, Percent_Identity=25.6544502617801, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22393; Mature: 22393

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS50977 HTH_TETR_2 ; PS00354 HMGI_Y

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNAAKRPRGRPKGFIRDEALDRAVEMFWEHGYEGVDVDRIASAVNVTKPALYRAFGDK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PTLLLKAVERYAMTYVAPRMAAFQAEPDIHKAVTAFCEATVNAASNEARGGCMLAAAAVG
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHCC
QSERVAEIRLYVATGLTATADVFAKRFEKEMKAGRLSRTPSAKVRGRLLVDLAQGLQLRG
CCCCHHHHEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHCCC
KVGIGREQLLQDARSYVPLILGKQI
CCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVTNAAKRPRGRPKGFIRDEALDRAVEMFWEHGYEGVDVDRIASAVNVTKPALYRAFGDK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PTLLLKAVERYAMTYVAPRMAAFQAEPDIHKAVTAFCEATVNAASNEARGGCMLAAAAVG
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHCC
QSERVAEIRLYVATGLTATADVFAKRFEKEMKAGRLSRTPSAKVRGRLLVDLAQGLQLRG
CCCCHHHHEEEHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCHHCCC
KVGIGREQLLQDARSYVPLILGKQI
CCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]