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The map label for this gene is 116625028

Identifier: 116625028

GI number: 116625028

Start: 7473506

End: 7474699

Strand: Direct

Name: 116625028

Synonym: Acid_5958

Alternate gene names: NA

Gene position: 7473506-7474699 (Clockwise)

Preceding gene: 116625022

Following gene: 116625029

Centisome position: 74.99

GC content: 63.07

Gene sequence:

>1194_bases
GTGATCTCCAATCAACAGACCGATACCATTATCCGCGCGTTAGACGCGTTTCATATCGAATTGCCATCCTGGGGGTTCGC
CAATACCGGGACCCGCTTCGGCAAATTCCTCCAGCCCGCCGCGGCCACCTCCACCGAGGACAAGTTCGCCGATGCCGGTC
AGGTGCATCGGTTGACCGGAGTCTGCCCCACGGTTGCCCTGCACGTCCTGTGGGACCTTCCCAACGGCGCCGCCGATTGC
GCCGGTGTCCAGGCCATGGCTGCCGAGCACGGGCTGCGGCCCGGCGCGATCAATCCGAACGTCTTTCAGGATCAAAACTA
CAAGTACGGCTCCATCGGCAATCCCGACCCGGCCATCCGCAAGGAAGCCATGGATCACATCCTCACTAGCGTGGAGATCC
AGAAGAAGCTCGGCAGCCGCGATCTCTCCCTCTGGTTCGCCGACGGCTCCAATTATCCCGGCACGCAAAACATGCGCCAT
CGCCGCCGCTGGTTCGCCGAAGGCCTGCAGCAGACCCACGCCGCCCTCGCCGGCGGACAGCGCATGCTGGTGGAGTACAA
GCCCTTCGAGCCTGCCTTCTATCACACCGATATCGCCGATTGGGGCATGGCGCTGGTGCTGGCGCAGACCGCCGGCCCCC
AAGCCAAGGTGCTCGTCGATACCGGCCATCACTATCAGGGCCAGAACATCGAGCAGATCGTCGCATGGCTGCTCGACATG
GACATGCTCGGCGGCTTCCACTTCAACGACCGCCGTTATGCCGATGACGATCTCACCATGGGCTCGATCGATCCCTACCA
GGTGTTCCGTATCTTCCATGAGATCGCGCACTTCGAATGGGAGACCGGAAAGCGCGCCGACATCGCCTATATGATCGATC
AGAGCCACAACCTCAAGGGCAAGATCGAGGCCATGATCCAGACCGTGACCACCGCGATGGAGTTGTACGCCAAGGCGGCG
CTGGTGGACCACAAGAAGCTGGCCGCCTGCCAGACCGCCTGCGCGCTGGTGGATGCCGAGACCTGCCTCAAGGACGCCTT
CAGTACCGACGTCCGCCCCGTGATCCGCGAGTGGGCCGTCTCCAAGGGCCTGCCGGCCGACGCCATGGACGCCTTCCGCC
AGAGCGGGTATCTGGAAAAGATCACCGCCGAGCGCGGCCAGAAGAACATGGCCGCCATGTCGAGCTACGCCTAG

Upstream 100 bases:

>100_bases
GGAAACCGGCGTTCTGCATACCAAAACTTCACCGGCACGCTCCGGAACCGTTTGACCTTGGCTGTCCTATGCGTGGATCA
TAATAAATCTGGCGGTTACC

Downstream 100 bases:

>100_bases
GGGAGCTATGCCGCGTTACGCATTCAAACTGCGCATCAAGCCGGAAGCCGTCGAAGAATACGAAATCGAACACAAGCGGG
TCTGGCCGGAGTTGCTGGCC

Product: xylose isomerase domain-containing protein

Products: D-xylulose

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MISNQQTDTIIRALDAFHIELPSWGFANTGTRFGKFLQPAAATSTEDKFADAGQVHRLTGVCPTVALHVLWDLPNGAADC
AGVQAMAAEHGLRPGAINPNVFQDQNYKYGSIGNPDPAIRKEAMDHILTSVEIQKKLGSRDLSLWFADGSNYPGTQNMRH
RRRWFAEGLQQTHAALAGGQRMLVEYKPFEPAFYHTDIADWGMALVLAQTAGPQAKVLVDTGHHYQGQNIEQIVAWLLDM
DMLGGFHFNDRRYADDDLTMGSIDPYQVFRIFHEIAHFEWETGKRADIAYMIDQSHNLKGKIEAMIQTVTTAMELYAKAA
LVDHKKLAACQTACALVDAETCLKDAFSTDVRPVIREWAVSKGLPADAMDAFRQSGYLEKITAERGQKNMAAMSSYA

Sequences:

>Translated_397_residues
MISNQQTDTIIRALDAFHIELPSWGFANTGTRFGKFLQPAAATSTEDKFADAGQVHRLTGVCPTVALHVLWDLPNGAADC
AGVQAMAAEHGLRPGAINPNVFQDQNYKYGSIGNPDPAIRKEAMDHILTSVEIQKKLGSRDLSLWFADGSNYPGTQNMRH
RRRWFAEGLQQTHAALAGGQRMLVEYKPFEPAFYHTDIADWGMALVLAQTAGPQAKVLVDTGHHYQGQNIEQIVAWLLDM
DMLGGFHFNDRRYADDDLTMGSIDPYQVFRIFHEIAHFEWETGKRADIAYMIDQSHNLKGKIEAMIQTVTTAMELYAKAA
LVDHKKLAACQTACALVDAETCLKDAFSTDVRPVIREWAVSKGLPADAMDAFRQSGYLEKITAERGQKNMAAMSSYA
>Mature_397_residues
MISNQQTDTIIRALDAFHIELPSWGFANTGTRFGKFLQPAAATSTEDKFADAGQVHRLTGVCPTVALHVLWDLPNGAADC
AGVQAMAAEHGLRPGAINPNVFQDQNYKYGSIGNPDPAIRKEAMDHILTSVEIQKKLGSRDLSLWFADGSNYPGTQNMRH
RRRWFAEGLQQTHAALAGGQRMLVEYKPFEPAFYHTDIADWGMALVLAQTAGPQAKVLVDTGHHYQGQNIEQIVAWLLDM
DMLGGFHFNDRRYADDDLTMGSIDPYQVFRIFHEIAHFEWETGKRADIAYMIDQSHNLKGKIEAMIQTVTTAMELYAKAA
LVDHKKLAACQTACALVDAETCLKDAFSTDVRPVIREWAVSKGLPADAMDAFRQSGYLEKITAERGQKNMAAMSSYA

Specific function: Unknown

COG id: COG4952

COG function: function code M; Predicted sugar isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013451
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: 5.3.1.5

Molecular weight: Translated: 44040; Mature: 44040

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNQQTDTIIRALDAFHIELPSWGFANTGTRFGKFLQPAAATSTEDKFADAGQVHRLTG
CCCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCHHCCCCCHHHHCCCCHHHHHH
VCPTVALHVLWDLPNGAADCAGVQAMAAEHGLRPGAINPNVFQDQNYKYGSIGNPDPAIR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
KEAMDHILTSVEIQKKLGSRDLSLWFADGSNYPGTQNMRHRRRWFAEGLQQTHAALAGGQ
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
RMLVEYKPFEPAFYHTDIADWGMALVLAQTAGPQAKVLVDTGHHYQGQNIEQIVAWLLDM
EEEEEECCCCCCCEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
DMLGGFHFNDRRYADDDLTMGSIDPYQVFRIFHEIAHFEWETGKRADIAYMIDQSHNLKG
HHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCH
KIEAMIQTVTTAMELYAKAALVDHKKLAACQTACALVDAETCLKDAFSTDVRPVIREWAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SKGLPADAMDAFRQSGYLEKITAERGQKNMAAMSSYA
HCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure
MISNQQTDTIIRALDAFHIELPSWGFANTGTRFGKFLQPAAATSTEDKFADAGQVHRLTG
CCCCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHCCHHCCCCCHHHHCCCCHHHHHH
VCPTVALHVLWDLPNGAADCAGVQAMAAEHGLRPGAINPNVFQDQNYKYGSIGNPDPAIR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
KEAMDHILTSVEIQKKLGSRDLSLWFADGSNYPGTQNMRHRRRWFAEGLQQTHAALAGGQ
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
RMLVEYKPFEPAFYHTDIADWGMALVLAQTAGPQAKVLVDTGHHYQGQNIEQIVAWLLDM
EEEEEECCCCCCCEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHH
DMLGGFHFNDRRYADDDLTMGSIDPYQVFRIFHEIAHFEWETGKRADIAYMIDQSHNLKG
HHHCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCH
KIEAMIQTVTTAMELYAKAALVDHKKLAACQTACALVDAETCLKDAFSTDVRPVIREWAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SKGLPADAMDAFRQSGYLEKITAERGQKNMAAMSSYA
HCCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-xylose

Specific reaction: D-xylose = D-xylulose

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]