Click here to switch to the map view.

The map label for this gene is rbsB [C]

Identifier: 116625005

GI number: 116625005

Start: 7440604

End: 7441743

Strand: Direct

Name: rbsB [C]

Synonym: Acid_5935

Alternate gene names: 116625005

Gene position: 7440604-7441743 (Clockwise)

Preceding gene: 116625002

Following gene: 116625007

Centisome position: 74.66

GC content: 62.28

Gene sequence:

>1140_bases
GTGAAGACTTCCAATCATAGCCGATATCTGGTGAAGAGCCTGGTGCACGCTTCGCGTGTGTTGGAGGCATTTCAGTCGGC
GGGCGACGTGTTACGCCTGCGCGACGTGGTGACTCGCACCGGCTTTCACAAGGGGATGTGTTTCCGCCTCCTGTACACGC
TGCACCAGTGCGGGTTTCTCGATAAAGTCGGCGAAAATCACTACCGCCTGGCCAGCGAAGTGCGGCGCCGCCGGTTGTAC
CGGATCGGGTACGCCGCGCAAGGACAGGACACCTCGTTCGATCGTGAAGTCCGCAGTGGGCTGGTGCGCGCGGCCGAGCG
CGAGCACGTGGAATTGATCGTGGTGGACAACCGCTATCAACCCAAGATCGCGCTGCGCAGCGCCGATTACCTGATCAAGG
AACAGGTGGACCTGGTGATCGAGTTCCAGACCGACGAATTGATCGCGCCGGCGATTGCGAGCAAGTACCTGGAGGCCAAT
ATCCCGCTCATCGCAATCGACATTCCCCATCCGGGCGCGACTTACTTCGGCGCCAATAACTACCAGGCGGGGCTGATGGC
CGGGCACTACCTGGGGCGCTGGGCCAAGAAGCACTGGGATAGTGAGCCGGACGAGATTCTCATGGTCGAACTGCACCGCG
CAGGTTCGCTGCCGAAGGCCCGGATCCGCGGCATCCAGACCGGGATCGCGGAAGTCATCCGGGTGCCGGAGCGCTGCCGC
ATCAGCAGCGTAGACGGCGATGGGCAGTTTCAAACTACGCTGGAGAGGGTGCGCAAGCATCTGCGCGAATCGAAGGCGAA
GCGCGTGCTGGTCGGCGCGGCCAACGATTCGAGTGCGCTGGGCGCGTTGCGTGCGTACGAAGAGGCGGGGCGCGCGAGCG
AGTGCGCCATTGTCGGTCAGAATGCGGAGCCGGAGGCGCGCGCGGAGTTGCGCACGGCGAATACACGGCTGATTGCGAGC
GTGGCGTACTTCCCGGAGAAGTACGGCGACGGACTGCTGAAATTAGCCCTCGAATTACTCTCGCGCAAGGCGGTGCCGCC
GGCGATATTCACCACGCACCAAACCATCACGACAGACAACGTGGATCACTTCTATCCCAACGACAGTCTGTTGAAGCCTG
CGAATTTGGCGCAGGGCTGA

Upstream 100 bases:

>100_bases
TCAATAAATCCCAGCTTTAAGGGGATTGTTAGCTGCGCTCGTGGGTTGGATCGACGATGGCAGCTGTTTTGGATGCCAAA
ACAAACGAAACGGGGTCCAC

Downstream 100 bases:

>100_bases
TGTAGGATAGGCCTCCTGGCCTGGGTCCAGCCGAGGTTGCTCGGCCCGGCGCTATGCGAAACTCACGCCCGATTGTGCGG
CGACCTTCTGGATATACGCG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MKTSNHSRYLVKSLVHASRVLEAFQSAGDVLRLRDVVTRTGFHKGMCFRLLYTLHQCGFLDKVGENHYRLASEVRRRRLY
RIGYAAQGQDTSFDREVRSGLVRAAEREHVELIVVDNRYQPKIALRSADYLIKEQVDLVIEFQTDELIAPAIASKYLEAN
IPLIAIDIPHPGATYFGANNYQAGLMAGHYLGRWAKKHWDSEPDEILMVELHRAGSLPKARIRGIQTGIAEVIRVPERCR
ISSVDGDGQFQTTLERVRKHLRESKAKRVLVGAANDSSALGALRAYEEAGRASECAIVGQNAEPEARAELRTANTRLIAS
VAYFPEKYGDGLLKLALELLSRKAVPPAIFTTHQTITTDNVDHFYPNDSLLKPANLAQG

Sequences:

>Translated_379_residues
MKTSNHSRYLVKSLVHASRVLEAFQSAGDVLRLRDVVTRTGFHKGMCFRLLYTLHQCGFLDKVGENHYRLASEVRRRRLY
RIGYAAQGQDTSFDREVRSGLVRAAEREHVELIVVDNRYQPKIALRSADYLIKEQVDLVIEFQTDELIAPAIASKYLEAN
IPLIAIDIPHPGATYFGANNYQAGLMAGHYLGRWAKKHWDSEPDEILMVELHRAGSLPKARIRGIQTGIAEVIRVPERCR
ISSVDGDGQFQTTLERVRKHLRESKAKRVLVGAANDSSALGALRAYEEAGRASECAIVGQNAEPEARAELRTANTRLIAS
VAYFPEKYGDGLLKLALELLSRKAVPPAIFTTHQTITTDNVDHFYPNDSLLKPANLAQG
>Mature_379_residues
MKTSNHSRYLVKSLVHASRVLEAFQSAGDVLRLRDVVTRTGFHKGMCFRLLYTLHQCGFLDKVGENHYRLASEVRRRRLY
RIGYAAQGQDTSFDREVRSGLVRAAEREHVELIVVDNRYQPKIALRSADYLIKEQVDLVIEFQTDELIAPAIASKYLEAN
IPLIAIDIPHPGATYFGANNYQAGLMAGHYLGRWAKKHWDSEPDEILMVELHRAGSLPKARIRGIQTGIAEVIRVPERCR
ISSVDGDGQFQTTLERVRKHLRESKAKRVLVGAANDSSALGALRAYEEAGRASECAIVGQNAEPEARAELRTANTRLIAS
VAYFPEKYGDGLLKLALELLSRKAVPPAIFTTHQTITTDNVDHFYPNDSLLKPANLAQG

Specific function: Involved In The High-Affinity D-Ribose Membrane Transport System And Also Serves As The Primary Chemoreceptor For Chemotaxis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42400; Mature: 42400

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS51077 HTH_ICLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTSNHSRYLVKSLVHASRVLEAFQSAGDVLRLRDVVTRTGFHKGMCFRLLYTLHQCGFL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
DKVGENHYRLASEVRRRRLYRIGYAAQGQDTSFDREVRSGLVRAAEREHVELIVVDNRYQ
HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
PKIALRSADYLIKEQVDLVIEFQTDELIAPAIASKYLEANIPLIAIDIPHPGATYFGANN
CEEEECHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCC
YQAGLMAGHYLGRWAKKHWDSEPDEILMVELHRAGSLPKARIRGIQTGIAEVIRVPERCR
CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE
ISSVDGDGQFQTTLERVRKHLRESKAKRVLVGAANDSSALGALRAYEEAGRASECAIVGQ
EECCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECC
NAEPEARAELRTANTRLIASVAYFPEKYGDGLLKLALELLSRKAVPPAIFTTHQTITTDN
CCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHEECCCEEEECC
VDHFYPNDSLLKPANLAQG
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTSNHSRYLVKSLVHASRVLEAFQSAGDVLRLRDVVTRTGFHKGMCFRLLYTLHQCGFL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
DKVGENHYRLASEVRRRRLYRIGYAAQGQDTSFDREVRSGLVRAAEREHVELIVVDNRYQ
HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
PKIALRSADYLIKEQVDLVIEFQTDELIAPAIASKYLEANIPLIAIDIPHPGATYFGANN
CEEEECHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCC
YQAGLMAGHYLGRWAKKHWDSEPDEILMVELHRAGSLPKARIRGIQTGIAEVIRVPERCR
CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCE
ISSVDGDGQFQTTLERVRKHLRESKAKRVLVGAANDSSALGALRAYEEAGRASECAIVGQ
EECCCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECC
NAEPEARAELRTANTRLIASVAYFPEKYGDGLLKLALELLSRKAVPPAIFTTHQTITTDN
CCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHEECCCEEEECC
VDHFYPNDSLLKPANLAQG
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA