Click here to switch to the map view.

The map label for this gene is p49 [H]

Identifier: 116624946

GI number: 116624946

Start: 7365214

End: 7366611

Strand: Reverse

Name: p49 [H]

Synonym: Acid_5875

Alternate gene names: 116624946

Gene position: 7366611-7365214 (Counterclockwise)

Preceding gene: 116624948

Following gene: 116624942

Centisome position: 73.92

GC content: 68.74

Gene sequence:

>1398_bases
TTGGCCGACTCAGCGAAAACACGAGCTGTGGTCGTCGGTTCCGGGCCCAATGGCTTGTCGGCCGCGATCGTGCTGGCGCG
CGGGGGCTGTGCTGTCACGGTGCTGGAAGGCGCGGAGACGATCGGCGGCGGCGCCCGCTCGGCGCAGTTGACGCTTCCCG
GATTTATTCACGATGTCTGCTCGGCGGTGCACCCGTTGGCGGCCTGCTCGCCGTGCTTTGAGCAGTGGCCGTTAGGGGCG
CACGGATTGGAATGGCTGCAGCCCGACGCTCCCTTGGCGCACCCGTGGGATGACGGGACGGCGATCGTGCTGGAGCGATC
GCTGGCTGCGACCGCGGCGGGATTGGGCGCGGATGGCGCGGCATGGGGGAAGCTCTTCGGACCGCTGGTGGAGGCGTGGC
CGAAGCTCCGCCACGACGTACTCGCGGCGTTCGGCATTCCGCGACATCCGATGCCGATGGCGCGATTCGGGCTTTCCGCG
GTGCGGTCCGCCAGGTCGCTGGCGGAATCGCGGTTTCGCGGGGAGCGGGCGCGGGCGTTGTTTGCCGGGATCGCGGCGCA
TTCCACGCTGCCGATGGAGGCGCCGCTCAGCGCGGGAGTGGGGCTGGTGCTGGGAATATGCGCGCATGCGGTGGGCTGGC
CTTTTCCGCGCGGCGGCGCGCAGAAAATCGCGGATGCGCTGGGCGGAAATCTGCGGGCGTTGGGCGGAGAGATCGTGACG
GGGAGGACGGTGACCGTACTGCCCGATGCGGCGGTGGTGCTGTGCGACGTGACGCCGCGTCAGTTGCTGGCGCTGGGCGG
CGACCGATTTCCGGCCGACTTTCGGGGGGCCCTCGGGCGTTATCGGTACGGGCCCGGGGCATTCAAGCTGGATTGGGCGC
TGGACGCACCAATACCCTGGAAGGCGCGGGAGTGCGCGCGGGCGGCGACGGTCCACCTGGGCGGCACGCTGGAAGAGATC
GCGCAGTGGGAGGGCGGCCACACCGGGCGGCCGTTCGTCCTGCTGGTGCAGCCTACGCTGTTCGATGCGACCCGTGCGCC
CGCGGGGAAGCACACCGCGTGGGCCTACTGCCATGTTCCGCACGGCTCGACGGTGGACATGACGCAGGCCATCGAAGACC
AGGTGGAGCGTTTTGCGCCCGGCTTCCGGGCACGGATCCTGGCGCGGAGCGTGATGCCGCCGGTGGCGATGGAGCAGCAC
AATCCCAACCTGGTGGGCGGGAATTTCAATGGCGGCGCGCTCGATTTTGGGCAGTTTTTCCTGCGTCCCACGCGGCGGTT
GTATGGCACACCGCTGAAGGGTGTCGGGATTTGTAGCGCCTCGACACCGCCGGGCGGCGGGGTGCACGGGATGTGCGGTT
TCCATGCGGCTTCAAGATTTCTCAAACGAATCCGATAA

Upstream 100 bases:

>100_bases
CCGCCGCCTCCCATCGCCCAGGCACCGACCCCGATCGGCGTCAATTCCAAATCGCTGTTGCCAAGCCGTTTCATCTTCAT
CTCTTCTACAATAACGGAGG

Downstream 100 bases:

>100_bases
GTAGCGTATGTCAGCGATCAGCTCGGCGGTATGTGGATTAGAAAGGGCGCAGACGAGTCTGGAGCAGGTGGCGGGACGGT
TGGCGAAGGCATCCAGCGCT

Product: phytoene dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 465; Mature: 464

Protein sequence:

>465_residues
MADSAKTRAVVVGSGPNGLSAAIVLARGGCAVTVLEGAETIGGGARSAQLTLPGFIHDVCSAVHPLAACSPCFEQWPLGA
HGLEWLQPDAPLAHPWDDGTAIVLERSLAATAAGLGADGAAWGKLFGPLVEAWPKLRHDVLAAFGIPRHPMPMARFGLSA
VRSARSLAESRFRGERARALFAGIAAHSTLPMEAPLSAGVGLVLGICAHAVGWPFPRGGAQKIADALGGNLRALGGEIVT
GRTVTVLPDAAVVLCDVTPRQLLALGGDRFPADFRGALGRYRYGPGAFKLDWALDAPIPWKARECARAATVHLGGTLEEI
AQWEGGHTGRPFVLLVQPTLFDATRAPAGKHTAWAYCHVPHGSTVDMTQAIEDQVERFAPGFRARILARSVMPPVAMEQH
NPNLVGGNFNGGALDFGQFFLRPTRRLYGTPLKGVGICSASTPPGGGVHGMCGFHAASRFLKRIR

Sequences:

>Translated_465_residues
MADSAKTRAVVVGSGPNGLSAAIVLARGGCAVTVLEGAETIGGGARSAQLTLPGFIHDVCSAVHPLAACSPCFEQWPLGA
HGLEWLQPDAPLAHPWDDGTAIVLERSLAATAAGLGADGAAWGKLFGPLVEAWPKLRHDVLAAFGIPRHPMPMARFGLSA
VRSARSLAESRFRGERARALFAGIAAHSTLPMEAPLSAGVGLVLGICAHAVGWPFPRGGAQKIADALGGNLRALGGEIVT
GRTVTVLPDAAVVLCDVTPRQLLALGGDRFPADFRGALGRYRYGPGAFKLDWALDAPIPWKARECARAATVHLGGTLEEI
AQWEGGHTGRPFVLLVQPTLFDATRAPAGKHTAWAYCHVPHGSTVDMTQAIEDQVERFAPGFRARILARSVMPPVAMEQH
NPNLVGGNFNGGALDFGQFFLRPTRRLYGTPLKGVGICSASTPPGGGVHGMCGFHAASRFLKRIR
>Mature_464_residues
ADSAKTRAVVVGSGPNGLSAAIVLARGGCAVTVLEGAETIGGGARSAQLTLPGFIHDVCSAVHPLAACSPCFEQWPLGAH
GLEWLQPDAPLAHPWDDGTAIVLERSLAATAAGLGADGAAWGKLFGPLVEAWPKLRHDVLAAFGIPRHPMPMARFGLSAV
RSARSLAESRFRGERARALFAGIAAHSTLPMEAPLSAGVGLVLGICAHAVGWPFPRGGAQKIADALGGNLRALGGEIVTG
RTVTVLPDAAVVLCDVTPRQLLALGGDRFPADFRGALGRYRYGPGAFKLDWALDAPIPWKARECARAATVHLGGTLEEIA
QWEGGHTGRPFVLLVQPTLFDATRAPAGKHTAWAYCHVPHGSTVDMTQAIEDQVERFAPGFRARILARSVMPPVAMEQHN
PNLVGGNFNGGALDFGQFFLRPTRRLYGTPLKGVGICSASTPPGGGVHGMCGFHAASRFLKRIR

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48729; Mature: 48597

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSAKTRAVVVGSGPNGLSAAIVLARGGCAVTVLEGAETIGGGARSAQLTLPGFIHDVC
CCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCHHCCCCCCEEEEECCHHHHHHH
SAVHPLAACSPCFEQWPLGAHGLEWLQPDAPLAHPWDDGTAIVLERSLAATAAGLGADGA
HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCH
AWGKLFGPLVEAWPKLRHDVLAAFGIPRHPMPMARFGLSAVRSARSLAESRFRGERARAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
FAGIAAHSTLPMEAPLSAGVGLVLGICAHAVGWPFPRGGAQKIADALGGNLRALGGEIVT
HHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEECCCEEEC
GRTVTVLPDAAVVLCDVTPRQLLALGGDRFPADFRGALGRYRYGPGAFKLDWALDAPIPW
CCEEEEECCCEEEEECCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
KARECARAATVHLGGTLEEIAQWEGGHTGRPFVLLVQPTLFDATRAPAGKHTAWAYCHVP
CHHHHHHHHEEECCCCHHHHHHCCCCCCCCCEEEEECCHHHHHHCCCCCCCCEEEEEECC
HGSTVDMTQAIEDQVERFAPGFRARILARSVMPPVAMEQHNPNLVGGNFNGGALDFGQFF
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHCCCCCEECCCCCCCCHHHHHHH
LRPTRRLYGTPLKGVGICSASTPPGGGVHGMCGFHAASRFLKRIR
HHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADSAKTRAVVVGSGPNGLSAAIVLARGGCAVTVLEGAETIGGGARSAQLTLPGFIHDVC
CCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEECCCHHCCCCCCEEEEECCHHHHHHH
SAVHPLAACSPCFEQWPLGAHGLEWLQPDAPLAHPWDDGTAIVLERSLAATAAGLGADGA
HHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHCCCCCCH
AWGKLFGPLVEAWPKLRHDVLAAFGIPRHPMPMARFGLSAVRSARSLAESRFRGERARAL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
FAGIAAHSTLPMEAPLSAGVGLVLGICAHAVGWPFPRGGAQKIADALGGNLRALGGEIVT
HHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEECCCEEEC
GRTVTVLPDAAVVLCDVTPRQLLALGGDRFPADFRGALGRYRYGPGAFKLDWALDAPIPW
CCEEEEECCCEEEEECCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEECCCCCC
KARECARAATVHLGGTLEEIAQWEGGHTGRPFVLLVQPTLFDATRAPAGKHTAWAYCHVP
CHHHHHHHHEEECCCCHHHHHHCCCCCCCCCEEEEECCHHHHHHCCCCCCCCEEEEEECC
HGSTVDMTQAIEDQVERFAPGFRARILARSVMPPVAMEQHNPNLVGGNFNGGALDFGQFF
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHCCCCCEECCCCCCCCHHHHHHH
LRPTRRLYGTPLKGVGICSASTPPGGGVHGMCGFHAASRFLKRIR
HHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]