Click here to switch to the map view.

The map label for this gene is ycaQ [H]

Identifier: 116624886

GI number: 116624886

Start: 7277562

End: 7278665

Strand: Reverse

Name: ycaQ [H]

Synonym: Acid_5810

Alternate gene names: 116624886

Gene position: 7278665-7277562 (Counterclockwise)

Preceding gene: 116624887

Following gene: 116624884

Centisome position: 73.04

GC content: 64.95

Gene sequence:

>1104_bases
GTGATCACGCTCCGCGACCTGCGGCGCTACGCGGTTGCCAACAGCCTGTTCGCGCCGACCACACTCAAACGCGCGATTGA
GCGGATGGGGTTTGTCCAGGCAGACCCGATCCGCGCACCGGCAAGGGCCCAGGACCTGACACTGCGGCACCGGGTGAAGG
ACTATCGCGCCGGCGATCTGGAACGCCGCTACGCCAGGTTGGGAATTGCCGAAGACGTATTCCTGAACTACGGCTTCGTC
ACGCGGACGGTGCAGGCGCTGATGCATCCGCGCTCGAACAGCGGAGTGCCGGCGGAGGGGTGCGGGCCATGGCCGCCGGA
CCGAACCAAGCAGGCGGAACTGCTGTTGGAGTTCGTACGCGAGCGCGGCGCCGTTCACCCGCGGGAAGTGGACGAGCATT
TCTCGCACGGCGCGGTGAAGAACTATTGGGGCGGCTCTTCGAACGCGACGACGCACCTCTTGGATGCGATGCATTACCGC
GGCCTGCTGCGTGTTGCGCGGCGGGAGGCCGGCATACGCATCTATAAGGAATGCCGGCATGAACCGGTACCGGAAGATGC
CGAAGCCCGCCGCGCGCGAATCGACAAACTGGTTGACGTGGCGGTTCGCATCCATGCGCCGCTGCCGGGTCCGAGCCTCG
CGTTCCTCCTACGCCGGCTGCGCTACGCCGTGCCGCAGTGGCACGGTGAATTGGCCGAGGCGCAGAGGCGAGCAAGGCAG
CGGCTGGCTCATTCACGAGTGGACGGCGTGGAGTGGTATTGGCCGGCCGCGGACGATGTGCGCCGCGAGGCGCCGGACGA
TACGGTGCGCTTGCTGGCGCCGTTCGACCCGGTGGTTTGGGATCGCGGCCGCTTCGAGCGGTTGTGGGGCTGGGTATACC
GTTTCGAAGCCTACACGCCGGCGCCAAAACGAAAGCGCGGATATTATGCGCTGCCGTTACTCTGGCGCGAGCAGGTGATC
GGCTGGGGCAACTTATCGGTGAAGGACGGTGAGCTGCAGTCTGATTTCGGCTATGTTGAATCGCCGCCGCGAGATCGCGC
ATTCAAAAGCGGGCTCAATGCGGAGTTAGATCGGATTCGGGCGTTTCTCGGGCTTACTTCTTGA

Upstream 100 bases:

>100_bases
GGCACGGCACTTCACGGCGGCGAAGCTGGTGGTGCTGTTGATCAACGCGCTGATCGTCTGGTATCTGGTGGCGCGAGTAC
GAGCGCACTAAAATGAAAGA

Downstream 100 bases:

>100_bases
CTGGTGTGTACTGCACTTCCGTGTAGCGCCCGTTTCTGAACTGCCAGAGGGCGGGAACACACGTGCCGCGCGACAATGCC
GAGCATTGGCTGGGAAGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MITLRDLRRYAVANSLFAPTTLKRAIERMGFVQADPIRAPARAQDLTLRHRVKDYRAGDLERRYARLGIAEDVFLNYGFV
TRTVQALMHPRSNSGVPAEGCGPWPPDRTKQAELLLEFVRERGAVHPREVDEHFSHGAVKNYWGGSSNATTHLLDAMHYR
GLLRVARREAGIRIYKECRHEPVPEDAEARRARIDKLVDVAVRIHAPLPGPSLAFLLRRLRYAVPQWHGELAEAQRRARQ
RLAHSRVDGVEWYWPAADDVRREAPDDTVRLLAPFDPVVWDRGRFERLWGWVYRFEAYTPAPKRKRGYYALPLLWREQVI
GWGNLSVKDGELQSDFGYVESPPRDRAFKSGLNAELDRIRAFLGLTS

Sequences:

>Translated_367_residues
MITLRDLRRYAVANSLFAPTTLKRAIERMGFVQADPIRAPARAQDLTLRHRVKDYRAGDLERRYARLGIAEDVFLNYGFV
TRTVQALMHPRSNSGVPAEGCGPWPPDRTKQAELLLEFVRERGAVHPREVDEHFSHGAVKNYWGGSSNATTHLLDAMHYR
GLLRVARREAGIRIYKECRHEPVPEDAEARRARIDKLVDVAVRIHAPLPGPSLAFLLRRLRYAVPQWHGELAEAQRRARQ
RLAHSRVDGVEWYWPAADDVRREAPDDTVRLLAPFDPVVWDRGRFERLWGWVYRFEAYTPAPKRKRGYYALPLLWREQVI
GWGNLSVKDGELQSDFGYVESPPRDRAFKSGLNAELDRIRAFLGLTS
>Mature_367_residues
MITLRDLRRYAVANSLFAPTTLKRAIERMGFVQADPIRAPARAQDLTLRHRVKDYRAGDLERRYARLGIAEDVFLNYGFV
TRTVQALMHPRSNSGVPAEGCGPWPPDRTKQAELLLEFVRERGAVHPREVDEHFSHGAVKNYWGGSSNATTHLLDAMHYR
GLLRVARREAGIRIYKECRHEPVPEDAEARRARIDKLVDVAVRIHAPLPGPSLAFLLRRLRYAVPQWHGELAEAQRRARQ
RLAHSRVDGVEWYWPAADDVRREAPDDTVRLLAPFDPVVWDRGRFERLWGWVYRFEAYTPAPKRKRGYYALPLLWREQVI
GWGNLSVKDGELQSDFGYVESPPRDRAFKSGLNAELDRIRAFLGLTS

Specific function: Unknown

COG id: COG3214

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787145, Length=315, Percent_Identity=28.2539682539683, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009351 [H]

Pfam domain/function: PF06224 DUF1006 [H]

EC number: NA

Molecular weight: Translated: 42275; Mature: 42275

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITLRDLRRYAVANSLFAPTTLKRAIERMGFVQADPIRAPARAQDLTLRHRVKDYRAGDL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
ERRYARLGIAEDVFLNYGFVTRTVQALMHPRSNSGVPAEGCGPWPPDRTKQAELLLEFVR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
ERGAVHPREVDEHFSHGAVKNYWGGSSNATTHLLDAMHYRGLLRVARREAGIRIYKECRH
HHCCCCHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
EPVPEDAEARRARIDKLVDVAVRIHAPLPGPSLAFLLRRLRYAVPQWHGELAEAQRRARQ
CCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RLAHSRVDGVEWYWPAADDVRREAPDDTVRLLAPFDPVVWDRGRFERLWGWVYRFEAYTP
HHHHHHCCCCEEECCCHHHHHHCCCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCCC
APKRKRGYYALPLLWREQVIGWGNLSVKDGELQSDFGYVESPPRDRAFKSGLNAELDRIR
CCCCCCCCEECHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHH
AFLGLTS
HHHHCCC
>Mature Secondary Structure
MITLRDLRRYAVANSLFAPTTLKRAIERMGFVQADPIRAPARAQDLTLRHRVKDYRAGDL
CCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
ERRYARLGIAEDVFLNYGFVTRTVQALMHPRSNSGVPAEGCGPWPPDRTKQAELLLEFVR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
ERGAVHPREVDEHFSHGAVKNYWGGSSNATTHLLDAMHYRGLLRVARREAGIRIYKECRH
HHCCCCHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCC
EPVPEDAEARRARIDKLVDVAVRIHAPLPGPSLAFLLRRLRYAVPQWHGELAEAQRRARQ
CCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
RLAHSRVDGVEWYWPAADDVRREAPDDTVRLLAPFDPVVWDRGRFERLWGWVYRFEAYTP
HHHHHHCCCCEEECCCHHHHHHCCCCCCEEEECCCCCHHCCCCHHHHHHHHHHHHHCCCC
APKRKRGYYALPLLWREQVIGWGNLSVKDGELQSDFGYVESPPRDRAFKSGLNAELDRIR
CCCCCCCCEECHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHH
AFLGLTS
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]