BacMap

Definition	Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession	NC_008536
Length	9,965,640

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The map label for this gene is gdhII [H]

Identifier: 116624883

GI number: 116624883

Start: 7274739

End: 7275455

Strand: Reverse

Name: gdhII [H]

Synonym: Acid_5807

Alternate gene names: 116624883

Gene position: 7275455-7274739 (Counterclockwise)

Preceding gene: 116624884

Following gene: 116624880

Centisome position: 73.01

GC content: 60.95

Gene sequence:

>717_bases
GTGAAGACAGCCATCGTGACCGGGGCTTCGCAAGGAATCGGCGCGGGGATTGTGAAGAGGTTTGTTGAACGGGGATTCCA
TGTTGTTGCCAGTTCCCGGAAGGTGACTCGATCGAGCGAGGTGGCTGCTTCCGATCAGGTTGCCCTGGTGGATGGCGACA
TCGGCCTGCCGGCTACCGCGGCCAAGATCGTCGAGACCGCGCTGTCGCGTTTTCAATCGATCGACGTGCTGGTCAATAAT
GCCGGCATCTTTTTCACCAAGCCGTTCACGGAGTATAAGGCCGAAGACTTCCGATCGCTGATCTCCACGAACATCGAAGG
CTTCTTGTATATCACTCAACTTTGCATCAAGCAGATGCTTGCGCAGAAGGCCGGCGGGAGTATCGTAACGATCACGGCGG
CGCTTGCCCGCAACCCGATCCGCGGCGTCACGGCGGCGGTGCCGATGATCACGAAAGGCGGGCTGGAAACGATCACCCAG
CACCTGGCGATGGAGTACGCGAAAGACGGCATCCGCGTGAACGCGGTCGCGCCCGGCGTCGTCATCACGCCGCTTCACCG
GGATACTCCGAAGGCCGTAATGGAAGGCCTGTCGCCGTTGGGGCGGCCTTCCACGGTCGATGACATTGCGGATGCCGTGA
TGTACCTGACGAGCGCGGCGACGGTGACCGGTCACATCCTGTATGTCGATGGCGGCGCCCACTTCGGCCGCTGGTAA

Upstream 100 bases:

>100_bases
CACTGGTGACGCACGCTTAGCTTGCGCGCAGTAGAGCGAAGCTCGCTGCAGATCGGGATGCGCGCGACTCGGAACCGTGC
CGGGTAAGGGAGAGGATGCC

Downstream 100 bases:

>100_bases
TCGTCAGGAGAAGAAGTCCACCCCGCCGGTCCCCAGATTGTAGATCGCTCCCACGATCTTTATGGTCTTCGCGGATTCCA
GATCGCGGAGGATCGTGCTG

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: GLCDH-II [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKTAIVTGASQGIGAGIVKRFVERGFHVVASSRKVTRSSEVAASDQVALVDGDIGLPATAAKIVETALSRFQSIDVLVNN
AGIFFTKPFTEYKAEDFRSLISTNIEGFLYITQLCIKQMLAQKAGGSIVTITAALARNPIRGVTAAVPMITKGGLETITQ
HLAMEYAKDGIRVNAVAPGVVITPLHRDTPKAVMEGLSPLGRPSTVDDIADAVMYLTSAATVTGHILYVDGGAHFGRW

Sequences:

>Translated_238_residues
MKTAIVTGASQGIGAGIVKRFVERGFHVVASSRKVTRSSEVAASDQVALVDGDIGLPATAAKIVETALSRFQSIDVLVNN
AGIFFTKPFTEYKAEDFRSLISTNIEGFLYITQLCIKQMLAQKAGGSIVTITAALARNPIRGVTAAVPMITKGGLETITQ
HLAMEYAKDGIRVNAVAPGVVITPLHRDTPKAVMEGLSPLGRPSTVDDIADAVMYLTSAATVTGHILYVDGGAHFGRW
>Mature_238_residues
MKTAIVTGASQGIGAGIVKRFVERGFHVVASSRKVTRSSEVAASDQVALVDGDIGLPATAAKIVETALSRFQSIDVLVNN
AGIFFTKPFTEYKAEDFRSLISTNIEGFLYITQLCIKQMLAQKAGGSIVTITAALARNPIRGVTAAVPMITKGGLETITQ
HLAMEYAKDGIRVNAVAPGVVITPLHRDTPKAVMEGLSPLGRPSTVDDIADAVMYLTSAATVTGHILYVDGGAHFGRW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=236, Percent_Identity=30.9322033898305, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI7705925, Length=240, Percent_Identity=32.5, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI19923817, Length=255, Percent_Identity=29.8039215686275, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=32.1285140562249, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=29.9595141700405, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI59889578, Length=187, Percent_Identity=32.620320855615, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI15277342, Length=247, Percent_Identity=26.7206477732794, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=7e-13,
Organism=Homo sapiens, GI33667109, Length=210, Percent_Identity=30.952380952381, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI66933014, Length=189, Percent_Identity=28.042328042328, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4504505, Length=253, Percent_Identity=28.0632411067194, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI4503301, Length=225, Percent_Identity=25.3333333333333, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788459, Length=242, Percent_Identity=31.404958677686, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=32.5102880658436, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=29.8804780876494, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787905, Length=244, Percent_Identity=31.5573770491803, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=30.4, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1790717, Length=264, Percent_Identity=27.6515151515151, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1786812, Length=250, Percent_Identity=28, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI2367175, Length=249, Percent_Identity=28.5140562248996, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI87082160, Length=242, Percent_Identity=28.9256198347107, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=28.2700421940928, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=30.5555555555556, Blast_Score=117, Evalue=4e-27,
Organism=Caenorhabditis elegans, GI71994604, Length=251, Percent_Identity=30.6772908366534, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=258, Percent_Identity=28.2945736434109, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI115534694, Length=248, Percent_Identity=32.258064516129, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17561402, Length=253, Percent_Identity=31.6205533596838, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17555706, Length=239, Percent_Identity=29.2887029288703, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17536025, Length=255, Percent_Identity=29.8039215686275, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=29.5275590551181, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25147288, Length=240, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=26.2357414448669, Blast_Score=80, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=28.030303030303, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=25.609756097561, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=259, Percent_Identity=26.6409266409266, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=193, Percent_Identity=29.0155440414508, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=194, Percent_Identity=30.4123711340206, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=257, Percent_Identity=24.124513618677, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=257, Percent_Identity=24.5136186770428, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=23.5521235521236, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=24.2424242424242, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=26.9372693726937, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=23.5521235521236, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=259, Percent_Identity=26.2548262548263, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=24.6212121212121, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=237, Percent_Identity=27.0042194092827, Blast_Score=72, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6322861, Length=253, Percent_Identity=26.4822134387352, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=235, Percent_Identity=26.8085106382979, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=34.8, Blast_Score=118, Evalue=4e-27,
Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=33.6032388663968, Blast_Score=115, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24643142, Length=238, Percent_Identity=33.1932773109244, Blast_Score=107, Evalue=5e-24,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=34, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=34.4, Blast_Score=103, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24639444, Length=241, Percent_Identity=29.8755186721992, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI116007236, Length=228, Percent_Identity=25.8771929824561, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24641232, Length=227, Percent_Identity=26.8722466960352, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=28.3400809716599, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24663911, Length=228, Percent_Identity=27.1929824561404, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640442, Length=197, Percent_Identity=30.9644670050761, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24641388, Length=232, Percent_Identity=28.0172413793103, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648944, Length=226, Percent_Identity=28.7610619469027, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571387, Length=235, Percent_Identity=26.8085106382979, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24648693, Length=227, Percent_Identity=26.8722466960352, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355889, Length=227, Percent_Identity=26.8722466960352, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007238, Length=194, Percent_Identity=22.680412371134, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.47 [H]

Molecular weight: Translated: 25157; Mature: 25157

Theoretical pI: Translated: 9.40; Mature: 9.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTAIVTGASQGIGAGIVKRFVERGFHVVASSRKVTRSSEVAASDQVALVDGDIGLPATA
CCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHH
AKIVETALSRFQSIDVLVNNAGIFFTKPFTEYKAEDFRSLISTNIEGFLYITQLCIKQML
HHHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AQKAGGSIVTITAALARNPIRGVTAAVPMITKGGLETITQHLAMEYAKDGIRVNAVAPGV
HHHCCCCEEEEEHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCE
VITPLHRDTPKAVMEGLSPLGRPSTVDDIADAVMYLTSAATVTGHILYVDGGAHFGRW
EEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKTAIVTGASQGIGAGIVKRFVERGFHVVASSRKVTRSSEVAASDQVALVDGDIGLPATA
CCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHH
AKIVETALSRFQSIDVLVNNAGIFFTKPFTEYKAEDFRSLISTNIEGFLYITQLCIKQML
HHHHHHHHHHHHHHHEEEECCCEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
AQKAGGSIVTITAALARNPIRGVTAAVPMITKGGLETITQHLAMEYAKDGIRVNAVAPGV
HHHCCCCEEEEEHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCE
VITPLHRDTPKAVMEGLSPLGRPSTVDDIADAVMYLTSAATVTGHILYVDGGAHFGRW
EEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA