Click here to switch to the map view.

The map label for this gene is 116624857

Identifier: 116624857

GI number: 116624857

Start: 7240626

End: 7242161

Strand: Reverse

Name: 116624857

Synonym: Acid_5781

Alternate gene names: NA

Gene position: 7242161-7240626 (Counterclockwise)

Preceding gene: 116624859

Following gene: 116624856

Centisome position: 72.67

GC content: 60.22

Gene sequence:

>1536_bases
ATGCCCAAAGTCTTCCTGGTCAATCCATCTAATGTGACACCAGGTTATAGCTTCATCACGCCACGCTGGCTCTTCGTGCT
CGCCGGCGCGACGCCGGTGGAGTTGGCCGGCGATCCGATTCTGATCGACGAGTCCCTGGAGCGATTCGACGCGACTCAAG
TGTCGCCCGGCGACGTGGTGGGTATCGGCATCACCAGCGGTAACTGCCTTCCCGGTTACCGTGTCTTGAAAGAAGCCAAG
GAGAGGGGAGGCACGGTGGTGGTCGGGGGCATTCACGCCACAATCTTTCCGGAGGAGCCGCTAAGCATGGGCGCCGATAG
CGTGGTCACCGGCAATGGCGACCTGATTTGGCGCAAAGTCGTTGAAGACGCACTATCCGGGCGATTGCAGCGGCGCTACG
ACGGCGGCCGCGTCCCCGGCGAAGAGATGGCTAAGGCGCGCTGGGATCTGCTCGACCCCTCGAAGTATATGATGGCTTCC
ATTCAGACCGTGGCCGGCTGTCCCGAGAACTGCAGCTTCTGTTCGGTCTGGGTAACCGACGGACGAAAGCCGCGCCAGCG
TCTGGCCGAAAAGGTGATTGAAGAAGCCAACGAACTCTACCGGATGGGTTTCCGCTATATCGTCTTCGCCGACGATAACT
TCAACCCCGCTACGCTGGGACGAATCGCGCGCGAGCCGAACCTGCAGGTCCGGCAGTCACTGGAAACCATCCGCCAAGAG
CGCCTCCGCTTCTTCGAACAGTACCATCGCAGCGTGCCCGACAATTTGTATGCCTTCACACAGATGACGGCCGAGATTAT
CGACGACGACGAGTATCTTCGCGGTATGCGCGATCACATGCGCATCCGTACCGCCCTGATTGGCGTGGAATCCTTCGATG
AAGAGGGACTGGAGGCCGCCAATAAGCAATGGAATCCGGTCGGTCAAAAGATGGTGCGCACCATTCAGACCATCCAGGAG
CGCGGCATTCTGGTGCTTGCGTCCTATATCTGCGGACTGGAATCGGACTCCGTGAATTCGCTGCGCGTGATGCGGCGTCA
TGCGCTGGAATCGGGCGCGGTCCTGGCGCAGTTCACCGTCTATTTCCCGTCGCCTGGCACTAAGGACTATCACGAGATGA
TCAGGGACCGGGTGCAGATCGGCCAGGCCGGATACGTCCCCAAGCACAAGACTCGCATTACGCAGGATCAGTTCTGGCTG
CATCCCGGACAGCGGGCCGACGTGGTGGCCCTGGCCGGTTTGAGCAAGGCGGAGCTGCTGCGCGAACACGCCGCCTGCTG
GAAGGCCTACTATTCACTGCCGGCGATTGTCGGACGGATGCGCAAGGGTGTCGGCAAGTCATGGCCGGCGGCAGGCAAGC
TCGCGTATTTGTTCGTCTCGCTCGCGTTCTGCCGGGTCTACGCGGAACACGGCGTCTCGGCGGATTCGGTACAGCGCGGC
AAAATGGGTGGAACCACCAAATTGCTTATTCAGACGGGCGTGGGAGTTTATAGCTTTTTCTTTCGCAGGAAGGCTTTCCG
CTTCCGGGTGACCTGA

Upstream 100 bases:

>100_bases
ACATTATACAGCCTGACATAACTAATAACGCGTCTTATGGAGTTTCTCCTTTTTCTGTCCGGCTAGGTCCTTTGTACTGG
TACTCGGAGAGGGAACTACC

Downstream 100 bases:

>100_bases
GCGAGAATGGCTACGGACCATGAGTGACAGCGACATCCCCAAGGAACTGATGGAGACCGTGTCGCTGCACGAGGGCACGG
CGGCCGCGCCGCTGCAGGCT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MPKVFLVNPSNVTPGYSFITPRWLFVLAGATPVELAGDPILIDESLERFDATQVSPGDVVGIGITSGNCLPGYRVLKEAK
ERGGTVVVGGIHATIFPEEPLSMGADSVVTGNGDLIWRKVVEDALSGRLQRRYDGGRVPGEEMAKARWDLLDPSKYMMAS
IQTVAGCPENCSFCSVWVTDGRKPRQRLAEKVIEEANELYRMGFRYIVFADDNFNPATLGRIAREPNLQVRQSLETIRQE
RLRFFEQYHRSVPDNLYAFTQMTAEIIDDDEYLRGMRDHMRIRTALIGVESFDEEGLEAANKQWNPVGQKMVRTIQTIQE
RGILVLASYICGLESDSVNSLRVMRRHALESGAVLAQFTVYFPSPGTKDYHEMIRDRVQIGQAGYVPKHKTRITQDQFWL
HPGQRADVVALAGLSKAELLREHAACWKAYYSLPAIVGRMRKGVGKSWPAAGKLAYLFVSLAFCRVYAEHGVSADSVQRG
KMGGTTKLLIQTGVGVYSFFFRRKAFRFRVT

Sequences:

>Translated_511_residues
MPKVFLVNPSNVTPGYSFITPRWLFVLAGATPVELAGDPILIDESLERFDATQVSPGDVVGIGITSGNCLPGYRVLKEAK
ERGGTVVVGGIHATIFPEEPLSMGADSVVTGNGDLIWRKVVEDALSGRLQRRYDGGRVPGEEMAKARWDLLDPSKYMMAS
IQTVAGCPENCSFCSVWVTDGRKPRQRLAEKVIEEANELYRMGFRYIVFADDNFNPATLGRIAREPNLQVRQSLETIRQE
RLRFFEQYHRSVPDNLYAFTQMTAEIIDDDEYLRGMRDHMRIRTALIGVESFDEEGLEAANKQWNPVGQKMVRTIQTIQE
RGILVLASYICGLESDSVNSLRVMRRHALESGAVLAQFTVYFPSPGTKDYHEMIRDRVQIGQAGYVPKHKTRITQDQFWL
HPGQRADVVALAGLSKAELLREHAACWKAYYSLPAIVGRMRKGVGKSWPAAGKLAYLFVSLAFCRVYAEHGVSADSVQRG
KMGGTTKLLIQTGVGVYSFFFRRKAFRFRVT
>Mature_510_residues
PKVFLVNPSNVTPGYSFITPRWLFVLAGATPVELAGDPILIDESLERFDATQVSPGDVVGIGITSGNCLPGYRVLKEAKE
RGGTVVVGGIHATIFPEEPLSMGADSVVTGNGDLIWRKVVEDALSGRLQRRYDGGRVPGEEMAKARWDLLDPSKYMMASI
QTVAGCPENCSFCSVWVTDGRKPRQRLAEKVIEEANELYRMGFRYIVFADDNFNPATLGRIAREPNLQVRQSLETIRQER
LRFFEQYHRSVPDNLYAFTQMTAEIIDDDEYLRGMRDHMRIRTALIGVESFDEEGLEAANKQWNPVGQKMVRTIQTIQER
GILVLASYICGLESDSVNSLRVMRRHALESGAVLAQFTVYFPSPGTKDYHEMIRDRVQIGQAGYVPKHKTRITQDQFWLH
PGQRADVVALAGLSKAELLREHAACWKAYYSLPAIVGRMRKGVGKSWPAAGKLAYLFVSLAFCRVYAEHGVSADSVQRGK
MGGTTKLLIQTGVGVYSFFFRRKAFRFRVT

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 57262; Mature: 57131

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKVFLVNPSNVTPGYSFITPRWLFVLAGATPVELAGDPILIDESLERFDATQVSPGDVV
CCCEEEECCCCCCCCCCHHCHHHHEEECCCCCCEECCCCEEECCHHHHHCCCCCCCCCEE
GIGITSGNCLPGYRVLKEAKERGGTVVVGGIHATIFPEEPLSMGADSVVTGNGDLIWRKV
EEEECCCCCCCHHHHHHHHHHCCCEEEEECEEEEECCCCCHHCCCCCEEECCCCHHHHHH
VEDALSGRLQRRYDGGRVPGEEMAKARWDLLDPSKYMMASIQTVAGCPENCSFCSVWVTD
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
GRKPRQRLAEKVIEEANELYRMGFRYIVFADDNFNPATLGRIAREPNLQVRQSLETIRQE
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
RLRFFEQYHRSVPDNLYAFTQMTAEIIDDDEYLRGMRDHMRIRTALIGVESFDEEGLEAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NKQWNPVGQKMVRTIQTIQERGILVLASYICGLESDSVNSLRVMRRHALESGAVLAQFTV
CCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
YFPSPGTKDYHEMIRDRVQIGQAGYVPKHKTRITQDQFWLHPGQRADVVALAGLSKAELL
EECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHEECCCCCCCEEEECCCCHHHHH
REHAACWKAYYSLPAIVGRMRKGVGKSWPAAGKLAYLFVSLAFCRVYAEHGVSADSVQRG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
KMGGTTKLLIQTGVGVYSFFFRRKAFRFRVT
CCCCCEEEEEHHCCHHHHHHHHHHHHEEECC
>Mature Secondary Structure 
PKVFLVNPSNVTPGYSFITPRWLFVLAGATPVELAGDPILIDESLERFDATQVSPGDVV
CCEEEECCCCCCCCCCHHCHHHHEEECCCCCCEECCCCEEECCHHHHHCCCCCCCCCEE
GIGITSGNCLPGYRVLKEAKERGGTVVVGGIHATIFPEEPLSMGADSVVTGNGDLIWRKV
EEEECCCCCCCHHHHHHHHHHCCCEEEEECEEEEECCCCCHHCCCCCEEECCCCHHHHHH
VEDALSGRLQRRYDGGRVPGEEMAKARWDLLDPSKYMMASIQTVAGCPENCSFCSVWVTD
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECC
GRKPRQRLAEKVIEEANELYRMGFRYIVFADDNFNPATLGRIAREPNLQVRQSLETIRQE
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
RLRFFEQYHRSVPDNLYAFTQMTAEIIDDDEYLRGMRDHMRIRTALIGVESFDEEGLEAA
HHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
NKQWNPVGQKMVRTIQTIQERGILVLASYICGLESDSVNSLRVMRRHALESGAVLAQFTV
CCCCCHHHHHHHHHHHHHHHCCHHEEHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEEEE
YFPSPGTKDYHEMIRDRVQIGQAGYVPKHKTRITQDQFWLHPGQRADVVALAGLSKAELL
EECCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCHHEECCCCCCCEEEECCCCHHHHH
REHAACWKAYYSLPAIVGRMRKGVGKSWPAAGKLAYLFVSLAFCRVYAEHGVSADSVQRG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCC
KMGGTTKLLIQTGVGVYSFFFRRKAFRFRVT
CCCCCEEEEEHHCCHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]