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The map label for this gene is rbpE [H]

Identifier: 116624848

GI number: 116624848

Start: 7232526

End: 7232819

Strand: Reverse

Name: rbpE [H]

Synonym: Acid_5772

Alternate gene names: 116624848

Gene position: 7232819-7232526 (Counterclockwise)

Preceding gene: 116624850

Following gene: 116624847

Centisome position: 72.58

GC content: 58.5

Gene sequence:

>294_bases
ATGAAAAACATCTTTGTAGGTAACCTCAGCTTTGGAGCGACGGAAGATACCGTACGCGCTCTCTTTGAAACTCATGGCAA
AGTTGACCGCGTCAACATTTGCACCGACCGCGATTCCGGACAGCCCCGCGGCTTCGGGTTTGTCGAAATGGCCAACGACT
CGGAAGCCGAAAAGGCAATCTCCGCAGTCAACGGCAAGGAACTTGATGGACGTGCGCTCAATGTGAACGAAGCCCGTCCC
AAGGCGGAGCGCTCGGGCGGCGGCGGCGGCGGCTTTGGCCGCAAGCGCTGGTAG

Upstream 100 bases:

>100_bases
GTAGGTTTGATGCCCCGCCAATTCTCGGCAGACTTCTCTAGCCAATCCGCTTCGTCTACCCCCAATTTGCTGCCGCTTTC
AAATCTGAAGGATAAGTGAA

Downstream 100 bases:

>100_bases
TTCTCTCCCCCAAATAGTGAGCCTCACGCGCCGTGAACCACCCCTGCCAGGGGCGGTTTGCGGCGCGTTTGCTTTTTCCG
CAAACATTTGAGGTTGAATT

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MKNIFVGNLSFGATEDTVRALFETHGKVDRVNICTDRDSGQPRGFGFVEMANDSEAEKAISAVNGKELDGRALNVNEARP
KAERSGGGGGGFGRKRW

Sequences:

>Translated_97_residues
MKNIFVGNLSFGATEDTVRALFETHGKVDRVNICTDRDSGQPRGFGFVEMANDSEAEKAISAVNGKELDGRALNVNEARP
KAERSGGGGGGFGRKRW
>Mature_97_residues
MKNIFVGNLSFGATEDTVRALFETHGKVDRVNICTDRDSGQPRGFGFVEMANDSEAEKAISAVNGKELDGRALNVNEARP
KAERSGGGGGGFGRKRW

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI4502847, Length=75, Percent_Identity=40, Blast_Score=68, Evalue=1e-12,
Organism=Homo sapiens, GI116734694, Length=85, Percent_Identity=37.6470588235294, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI116734696, Length=85, Percent_Identity=37.6470588235294, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI116734698, Length=85, Percent_Identity=37.6470588235294, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI47271443, Length=79, Percent_Identity=41.7721518987342, Blast_Score=66, Evalue=6e-12,
Organism=Homo sapiens, GI35493811, Length=86, Percent_Identity=31.3953488372093, Blast_Score=65, Evalue=9e-12,
Organism=Homo sapiens, GI4757926, Length=86, Percent_Identity=31.3953488372093, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI14149675, Length=78, Percent_Identity=37.1794871794872, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI221139802, Length=88, Percent_Identity=38.6363636363636, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4557493, Length=78, Percent_Identity=37.1794871794872, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI15055543, Length=79, Percent_Identity=39.2405063291139, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17553656, Length=77, Percent_Identity=42.8571428571429, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=76, Percent_Identity=40.7894736842105, Blast_Score=71, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508587, Length=78, Percent_Identity=42.3076923076923, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17508567, Length=75, Percent_Identity=40, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321599, Length=78, Percent_Identity=39.7435897435897, Blast_Score=70, Evalue=6e-14,
Organism=Drosophila melanogaster, GI17137710, Length=84, Percent_Identity=38.0952380952381, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582417, Length=72, Percent_Identity=40.2777777777778, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI45550943, Length=72, Percent_Identity=40.2777777777778, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582419, Length=72, Percent_Identity=40.2777777777778, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582423, Length=72, Percent_Identity=40.2777777777778, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24582421, Length=72, Percent_Identity=40.2777777777778, Blast_Score=69, Evalue=6e-13,
Organism=Drosophila melanogaster, GI19920866, Length=72, Percent_Identity=40.2777777777778, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24582412, Length=72, Percent_Identity=40.2777777777778, Blast_Score=69, Evalue=7e-13,
Organism=Drosophila melanogaster, GI221330653, Length=86, Percent_Identity=36.046511627907, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI221330652, Length=86, Percent_Identity=36.046511627907, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI62471589, Length=86, Percent_Identity=36.046511627907, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI19549692, Length=86, Percent_Identity=36.046511627907, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI19549688, Length=86, Percent_Identity=36.046511627907, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI19549690, Length=86, Percent_Identity=36.046511627907, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI19549694, Length=86, Percent_Identity=36.046511627907, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10431; Mature: 10431

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIFVGNLSFGATEDTVRALFETHGKVDRVNICTDRDSGQPRGFGFVEMANDSEAEKAI
CCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHHHH
SAVNGKELDGRALNVNEARPKAERSGGGGGGFGRKRW
HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNIFVGNLSFGATEDTVRALFETHGKVDRVNICTDRDSGQPRGFGFVEMANDSEAEKAI
CCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEECCCCHHHHHH
SAVNGKELDGRALNVNEARPKAERSGGGGGGFGRKRW
HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]