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The map label for this gene is sigK [H]

Identifier: 116624793

GI number: 116624793

Start: 7164759

End: 7165382

Strand: Reverse

Name: sigK [H]

Synonym: Acid_5717

Alternate gene names: 116624793

Gene position: 7165382-7164759 (Counterclockwise)

Preceding gene: 116624800

Following gene: 116624792

Centisome position: 71.9

GC content: 65.54

Gene sequence:

>624_bases
ATGCTGGCAACTTCGAGCTCGGCAACTATCATGAGTCAAGAATCATCGGCGGCAGCGGCGCGGGAAAAGCCGGCCAGCCT
GGTGTTCCTGGTGGAGGCGATGGCGCAGGGGCAGCAGAACGCGCTGGGCCAACTCTACGACGAGACCTCCGCGCTGCTCA
ACGGGCTACTGGTGCGGATGCTGGAGCGGCCCGAAGATGCGGAGGAAGTGCTGTTGGATGTGTATATGAAGGCGTGGAAA
TACGCGGGGGGCTACTCGGAAGCGCGGGGGAGCGTCCAGGCGTGGCTGGTCACGATGGCGCGCAACGCGGCGATCGACCG
GATCCGGCAGCACCGCGCGCAGCCCAAAGCTCTGGTCTTCGCACCCGAGAATCAGGCTGAGCCGATCTCCTCGGCCGCCT
CCCCGGAGCAGCAGGCATTCGACCGTCAACGCCGCCGCCGGGTGCAACACCTGTTAAATCAGCTACCGCTGGAGCAGCGG
CAGACGCTGATGCTGGCCTTCTTCGGCGGCCTGACGCACGCTGAACTTGCGGAGCGATTAGGCGAGCCCCTCGGCACTGT
GAAGAGCCGGATTCGCGCCGGCCTGATCCGCATGCGCGGCCTGCTCGAGGAGCCTGCACTATGA

Upstream 100 bases:

>100_bases
AAGCAGAATGGGCGGCAGATAAACGCAGATAAAACAAAAAGCTGGAAGTGATCCAAAGTGCGCGCAATATACGTACAGAC
AAATGGGGCTTCCCTGAGAT

Downstream 100 bases:

>100_bases
GTGAGGAACTGTTTACCGAACTGCCAGAGGCCGCCCGGCTGCTGGCGGAGAGCCTGGATCCGGTGGCGCCCGCGCCCGGC
CTGAAGGCGCGGCTGATGAC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MLATSSSATIMSQESSAAAAREKPASLVFLVEAMAQGQQNALGQLYDETSALLNGLLVRMLERPEDAEEVLLDVYMKAWK
YAGGYSEARGSVQAWLVTMARNAAIDRIRQHRAQPKALVFAPENQAEPISSAASPEQQAFDRQRRRRVQHLLNQLPLEQR
QTLMLAFFGGLTHAELAERLGEPLGTVKSRIRAGLIRMRGLLEEPAL

Sequences:

>Translated_207_residues
MLATSSSATIMSQESSAAAAREKPASLVFLVEAMAQGQQNALGQLYDETSALLNGLLVRMLERPEDAEEVLLDVYMKAWK
YAGGYSEARGSVQAWLVTMARNAAIDRIRQHRAQPKALVFAPENQAEPISSAASPEQQAFDRQRRRRVQHLLNQLPLEQR
QTLMLAFFGGLTHAELAERLGEPLGTVKSRIRAGLIRMRGLLEEPAL
>Mature_207_residues
MLATSSSATIMSQESSAAAAREKPASLVFLVEAMAQGQQNALGQLYDETSALLNGLLVRMLERPEDAEEVLLDVYMKAWK
YAGGYSEARGSVQAWLVTMARNAAIDRIRQHRAQPKALVFAPENQAEPISSAASPEQQAFDRQRRRRVQHLLNQLPLEQR
QTLMLAFFGGLTHAELAERLGEPLGTVKSRIRAGLIRMRGLLEEPAL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 22897; Mature: 22897

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLATSSSATIMSQESSAAAAREKPASLVFLVEAMAQGQQNALGQLYDETSALLNGLLVRM
CCCCCCCCHHHCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LERPEDAEEVLLDVYMKAWKYAGGYSEARGSVQAWLVTMARNAAIDRIRQHRAQPKALVF
HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
APENQAEPISSAASPEQQAFDRQRRRRVQHLLNQLPLEQRQTLMLAFFGGLTHAELAERL
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
GEPLGTVKSRIRAGLIRMRGLLEEPAL
CCHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLATSSSATIMSQESSAAAAREKPASLVFLVEAMAQGQQNALGQLYDETSALLNGLLVRM
CCCCCCCCHHHCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
LERPEDAEEVLLDVYMKAWKYAGGYSEARGSVQAWLVTMARNAAIDRIRQHRAQPKALVF
HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE
APENQAEPISSAASPEQQAFDRQRRRRVQHLLNQLPLEQRQTLMLAFFGGLTHAELAERL
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
GEPLGTVKSRIRAGLIRMRGLLEEPAL
CCHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA