Click here to switch to the map view.

The map label for this gene is 116624643

Identifier: 116624643

GI number: 116624643

Start: 6978673

End: 6980190

Strand: Reverse

Name: 116624643

Synonym: Acid_5567

Alternate gene names: NA

Gene position: 6980190-6978673 (Counterclockwise)

Preceding gene: 116624644

Following gene: 116624639

Centisome position: 70.04

GC content: 60.28

Gene sequence:

>1518_bases
TTGCACGACACCAACAATAATTGCGCTTCGGCGCCTGCGAAAACCGAGGACCGGACGTTCCTGGAAAATCTGCGTTCCGT
GACCGACTTTCTGGAATCGATCGCTGCGAACCGCGAGCTCCTCAGGGGGGTGCCGGTCGATGAGCGGGAGCGGCTCCATC
GGGCCATCGCGGAAGCGTACATTCCCGATCCGGTTGCGCGGCGGCGGAGGGTGCAGGCCGCGGCGCGCGAACGGGTGGCG
GCGCGAGCAGAACGCGCAGATGCCGTGCTTAACGAGACGGGGATTCGGACGCTCCGTCGCAGAACCGAGTTCACAACCCC
GAATATATTTGCGCCTGAGAACTTCGAGCAGCAGGAGAGAGAAGCCGCAGAGACCGACCCACAGCACTGCTACATCTGCA
AACAGAATTTCACGACGGTTCACCATTTTTACGATCAAATGTGTCCGCCGTGCGCCGAGTTTAATTTCAATAAGCGAACC
GAGCTGGCGGACCTCCGCGGCCGGGTCGCGCTACTGACCGGCGGGCGGGTAAAAATCGGCTATCAGGCGGGGCTCAAGCT
GCTTCGCGCAGGGGCACATTTGATTGTCACCACGCGTTTCCCTCGGGATTCAGCCAAGCGCTACTCGCGGGAACCGGATT
TTTGCGAATGGGGGCAGCGTCTTGAAATCTTCGGATTAGACATGCGCAGCCCTGCCAGCGTCGAGGCGCTCTGCCAGCAC
CTGCTCGATAGACATCCGAGGCTTGATTTCATCATTAACAATGCCTGCCAGACGGTTCGACGGCCGCCGGAGTTTTACGC
GCACATGATGGAGGGAGAGAGGGCGGCACTTGACCGAATGCCGGCGGAGGCGCGCCGTCTGCTGGGAGTCTGCGACGAAC
CGGCCGGCAGCCTGCTGCCTCAGGCGGGCTGGATCACCCACGCCGCGGAACTATCTCAAGTTCCTCTGTTGGCCGAGGAT
CTGGCCAGGCAAGAGCATCTATTCCCCAAAGGCCGTCTCGACCAGGATTTGCAGCAGGTGGATCTGCGCGGCCGGAATTC
GTGGCGGCTGTTAATGGCGGAAGTATCTTCCGTGGAATTGCTGGAGGTGCAGTTGATCAATGCGGTCGCGCCGTTCATTA
TGAACGCCCGGCTCAAGCCCCTGATGATGCGAACGCCGGAGCGCGACAAGCATATCGTCAATGTATCCGCGATGGAAGGC
CAGTTTTACGGGCACCGGAAGACGACCCGCCACCCTCACACCAACATGGCCAAGGCCGCGCTAAACATGATGACCAGGAC
CGCGGCCAAGGATTATTTCAATGACGGTATCCACATGAATAGCGTGGATACGGGATGGGTCACGGATGAAGACCCGGTGC
CGATCGCCGCGCGGAAGGTTGTGGAGCAGCGCTTTCACCCGCCGCTCGATACCGTAGACGGTGCGGCGAGAATTCTCGAT
CCCCTCATTACCGGCTTCAACACGGGGCAACACGTGTGGGGACAGTTCCTGAAAGACTACCGGCAAACGGACTGGTAG

Upstream 100 bases:

>100_bases
TACACGTACAGCGGATCGCTGATGGGAGAGTTGAAGCGATAATGGGTAAGACAGGTCGCATCACGTAGTTTTAGTTCTCA
AGGAACCCAAGGCCATTCTC

Downstream 100 bases:

>100_bases
CTTTTATGGCTGTTAAGCGTCTGCGGTCAAAGCACTCGATCGGGAATGTTGACGGTCAACACCGTTATCGGAAAAAGGCT
TCTACGCCTCGCTGAATAAC

Product: oxidoreductase

Products: NA

Alternate protein names: Short Chain Dehydrogenase; Dehydrogenase; Short Chain Dehydrogenase/Reductase Family Oxidoreductase; Short-Chain Dehydrogenase; Oxidoreductase Short Chain Dehydrogenase/Reductase Family; Short-Chain Alcohol Dehydrogenase Like Protein; Short-Chain Dehydrogenases/Reductases Family Protein; Short-Chain Dehydrogenase/Reductase SDR

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
MHDTNNNCASAPAKTEDRTFLENLRSVTDFLESIAANRELLRGVPVDERERLHRAIAEAYIPDPVARRRRVQAAARERVA
ARAERADAVLNETGIRTLRRRTEFTTPNIFAPENFEQQEREAAETDPQHCYICKQNFTTVHHFYDQMCPPCAEFNFNKRT
ELADLRGRVALLTGGRVKIGYQAGLKLLRAGAHLIVTTRFPRDSAKRYSREPDFCEWGQRLEIFGLDMRSPASVEALCQH
LLDRHPRLDFIINNACQTVRRPPEFYAHMMEGERAALDRMPAEARRLLGVCDEPAGSLLPQAGWITHAAELSQVPLLAED
LARQEHLFPKGRLDQDLQQVDLRGRNSWRLLMAEVSSVELLEVQLINAVAPFIMNARLKPLMMRTPERDKHIVNVSAMEG
QFYGHRKTTRHPHTNMAKAALNMMTRTAAKDYFNDGIHMNSVDTGWVTDEDPVPIAARKVVEQRFHPPLDTVDGAARILD
PLITGFNTGQHVWGQFLKDYRQTDW

Sequences:

>Translated_505_residues
MHDTNNNCASAPAKTEDRTFLENLRSVTDFLESIAANRELLRGVPVDERERLHRAIAEAYIPDPVARRRRVQAAARERVA
ARAERADAVLNETGIRTLRRRTEFTTPNIFAPENFEQQEREAAETDPQHCYICKQNFTTVHHFYDQMCPPCAEFNFNKRT
ELADLRGRVALLTGGRVKIGYQAGLKLLRAGAHLIVTTRFPRDSAKRYSREPDFCEWGQRLEIFGLDMRSPASVEALCQH
LLDRHPRLDFIINNACQTVRRPPEFYAHMMEGERAALDRMPAEARRLLGVCDEPAGSLLPQAGWITHAAELSQVPLLAED
LARQEHLFPKGRLDQDLQQVDLRGRNSWRLLMAEVSSVELLEVQLINAVAPFIMNARLKPLMMRTPERDKHIVNVSAMEG
QFYGHRKTTRHPHTNMAKAALNMMTRTAAKDYFNDGIHMNSVDTGWVTDEDPVPIAARKVVEQRFHPPLDTVDGAARILD
PLITGFNTGQHVWGQFLKDYRQTDW
>Mature_505_residues
MHDTNNNCASAPAKTEDRTFLENLRSVTDFLESIAANRELLRGVPVDERERLHRAIAEAYIPDPVARRRRVQAAARERVA
ARAERADAVLNETGIRTLRRRTEFTTPNIFAPENFEQQEREAAETDPQHCYICKQNFTTVHHFYDQMCPPCAEFNFNKRT
ELADLRGRVALLTGGRVKIGYQAGLKLLRAGAHLIVTTRFPRDSAKRYSREPDFCEWGQRLEIFGLDMRSPASVEALCQH
LLDRHPRLDFIINNACQTVRRPPEFYAHMMEGERAALDRMPAEARRLLGVCDEPAGSLLPQAGWITHAAELSQVPLLAED
LARQEHLFPKGRLDQDLQQVDLRGRNSWRLLMAEVSSVELLEVQLINAVAPFIMNARLKPLMMRTPERDKHIVNVSAMEG
QFYGHRKTTRHPHTNMAKAALNMMTRTAAKDYFNDGIHMNSVDTGWVTDEDPVPIAARKVVEQRFHPPLDTVDGAARILD
PLITGFNTGQHVWGQFLKDYRQTDW

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57653; Mature: 57653

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDTNNNCASAPAKTEDRTFLENLRSVTDFLESIAANRELLRGVPVDERERLHRAIAEAY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH
IPDPVARRRRVQAAARERVAARAERADAVLNETGIRTLRRRTEFTTPNIFAPENFEQQER
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
EAAETDPQHCYICKQNFTTVHHFYDQMCPPCAEFNFNKRTELADLRGRVALLTGGRVKIG
HHHCCCCCEEEEECCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHCCCEEEEECCEEEEE
YQAGLKLLRAGAHLIVTTRFPRDSAKRYSREPDFCEWGQRLEIFGLDMRSPASVEALCQH
HHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCHHHHCCEEEEEECCCCCCCCHHHHHHH
LLDRHPRLDFIINNACQTVRRPPEFYAHMMEGERAALDRMPAEARRLLGVCDEPAGSLLP
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCHHHHHHHCCCCCCHHHHCC
QAGWITHAAELSQVPLLAEDLARQEHLFPKGRLDQDLQQVDLRGRNSWRLLMAEVSSVEL
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEHHHHHCCHHH
LEVQLINAVAPFIMNARLKPLMMRTPERDKHIVNVSAMEGQFYGHRKTTRHPHTNMAKAA
HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHH
LNMMTRTAAKDYFNDGIHMNSVDTGWVTDEDPVPIAARKVVEQRFHPPLDTVDGAARILD
HHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
PLITGFNTGQHVWGQFLKDYRQTDW
HHHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHDTNNNCASAPAKTEDRTFLENLRSVTDFLESIAANRELLRGVPVDERERLHRAIAEAY
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHH
IPDPVARRRRVQAAARERVAARAERADAVLNETGIRTLRRRTEFTTPNIFAPENFEQQER
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
EAAETDPQHCYICKQNFTTVHHFYDQMCPPCAEFNFNKRTELADLRGRVALLTGGRVKIG
HHHCCCCCEEEEECCCCHHHHHHHHHHCCCHHCCCCCCCHHHHHHCCCEEEEECCEEEEE
YQAGLKLLRAGAHLIVTTRFPRDSAKRYSREPDFCEWGQRLEIFGLDMRSPASVEALCQH
HHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCHHHHCCEEEEEECCCCCCCCHHHHHHH
LLDRHPRLDFIINNACQTVRRPPEFYAHMMEGERAALDRMPAEARRLLGVCDEPAGSLLP
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCHHHHHHHCCCCCCHHHHCC
QAGWITHAAELSQVPLLAEDLARQEHLFPKGRLDQDLQQVDLRGRNSWRLLMAEVSSVEL
CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCEEHHHHHCCHHH
LEVQLINAVAPFIMNARLKPLMMRTPERDKHIVNVSAMEGQFYGHRKTTRHPHTNMAKAA
HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHH
LNMMTRTAAKDYFNDGIHMNSVDTGWVTDEDPVPIAARKVVEQRFHPPLDTVDGAARILD
HHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
PLITGFNTGQHVWGQFLKDYRQTDW
HHHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA