Click here to switch to the map view.

The map label for this gene is ybaK [C]

Identifier: 116624508

GI number: 116624508

Start: 6808597

End: 6809088

Strand: Reverse

Name: ybaK [C]

Synonym: Acid_5432

Alternate gene names: 116624508

Gene position: 6809088-6808597 (Counterclockwise)

Preceding gene: 116624510

Following gene: 116624507

Centisome position: 68.33

GC content: 64.23

Gene sequence:

>492_bases
ATGGCGAAAAAGGAGCCCGCGGCCAAAACCAACGCGGCCCGAATTTTGGATGCGGCGGGCGTTTACTACGAACTGCGCGA
GTACGAAGTCGATGAGAACGATCTGAGTGCGCCGCACGTGGCTGAGATGATCGGCATGCCGCCGGAGCAGGTGTTCAAGA
CGCTGGTGGCGCGCGGCGACCGCGGCGGCGTGCTCATGGCCTGCATTCCGGCGAACGCGGAGCTCGATCTCAAGGCCTTG
GCGGCGGCCAGCGGGAACAAGAAGGTTGAGCTGGTGGCGGTGAAGGAAGTGCTCGGGCTGACGGGTTATATTCGGGGCGG
AGTATCCCCGGTGGGGACAAAGAAGCCGTACCCATTCTTTCTGGATGAGACCGCCGACCTGTGGGACGTGATTTCGGTCA
GCGCCGGAATGCGCGGCTGCCAGATGATCCTGGCTCCGGACGGCCTGGCGCGGGTGACCGGGGCGCAGCGCTGCGCGATC
GCCAGGTATTAA

Upstream 100 bases:

>100_bases
TGGTACTTCGTGTCCTCGTTGAGGTAGATGGTGACTTTCTTTGCCGGACCTATGGTCAGCATTTTTCCAAAGATAACACC
TTGGACCGTACAATAAATCG

Downstream 100 bases:

>100_bases
CACTTATGGCTTTGCTGCTATTGAAATTTCTGCATAGCGGCTATCAAAATTTCTTTTGCTGGACTCGTAACCAAATCGAT
GTATACTGACCCAAACGTCT

Product: ybaK/ebsC protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MAKKEPAAKTNAARILDAAGVYYELREYEVDENDLSAPHVAEMIGMPPEQVFKTLVARGDRGGVLMACIPANAELDLKAL
AAASGNKKVELVAVKEVLGLTGYIRGGVSPVGTKKPYPFFLDETADLWDVISVSAGMRGCQMILAPDGLARVTGAQRCAI
ARY

Sequences:

>Translated_163_residues
MAKKEPAAKTNAARILDAAGVYYELREYEVDENDLSAPHVAEMIGMPPEQVFKTLVARGDRGGVLMACIPANAELDLKAL
AAASGNKKVELVAVKEVLGLTGYIRGGVSPVGTKKPYPFFLDETADLWDVISVSAGMRGCQMILAPDGLARVTGAQRCAI
ARY
>Mature_162_residues
AKKEPAAKTNAARILDAAGVYYELREYEVDENDLSAPHVAEMIGMPPEQVFKTLVARGDRGGVLMACIPANAELDLKALA
AASGNKKVELVAVKEVLGLTGYIRGGVSPVGTKKPYPFFLDETADLWDVISVSAGMRGCQMILAPDGLARVTGAQRCAIA
RY

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=35.8974358974359, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17368; Mature: 17237

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKEPAAKTNAARILDAAGVYYELREYEVDENDLSAPHVAEMIGMPPEQVFKTLVARGD
CCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
RGGVLMACIPANAELDLKALAAASGNKKVELVAVKEVLGLTGYIRGGVSPVGTKKPYPFF
CCCEEEEEECCCCCCCHHEEEECCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCEE
LDETADLWDVISVSAGMRGCQMILAPDGLARVTGAQRCAIARY
ECCCCHHHHHHHHHCCCCCCEEEECCCCHHHHCCCCCEEECCC
>Mature Secondary Structure 
AKKEPAAKTNAARILDAAGVYYELREYEVDENDLSAPHVAEMIGMPPEQVFKTLVARGD
CCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
RGGVLMACIPANAELDLKALAAASGNKKVELVAVKEVLGLTGYIRGGVSPVGTKKPYPFF
CCCEEEEEECCCCCCCHHEEEECCCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCEE
LDETADLWDVISVSAGMRGCQMILAPDGLARVTGAQRCAIARY
ECCCCHHHHHHHHHCCCCCCEEEECCCCHHHHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]