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The map label for this gene is lrpC [H]

Identifier: 116624293

GI number: 116624293

Start: 6539499

End: 6539963

Strand: Direct

Name: lrpC [H]

Synonym: Acid_5211

Alternate gene names: 116624293

Gene position: 6539499-6539963 (Clockwise)

Preceding gene: 116624287

Following gene: 116624295

Centisome position: 65.62

GC content: 64.52

Gene sequence:

>465_bases
ATGGCCGTTGAATCAAGCGCCTTATTGGACGAAACCGGCAGAAATCTTCTGTCGGCGCTACAGGAAGACGCCCGGTTGAG
CTACGCGGAGCTGGGGCGGCGGATCGGGCTCTCTCCGGCGGCGACGGCGGAGCGGCTGCGGCGCATGGAGGAGGCGGAAA
TCATCACGGGATACCGGGTGGAGATCGACCGGGAAGCGCTGGGGCTGCCGGTGCTGGCGATTGTGCGGATGAGCTGCGAC
GGGGCGAAATACCGGCCGTTTTTGAAGGCGGTGAAGGGGATGGAGGGCGTGGTGGAGTGCCATCACGTGGCCGGCGGCGA
CGCGTTCATTCTGAAAGTGGTGGCGGGGAGCGTCGGAGATCTCGGTCGCGTGGTGGAGAAGCTGCTGGATTTCGGAGTGC
CGACCACGAGCATCGTGTTTTCGTCGCCGGTCGAGCGGCGAGAGCTGAAGGTGGCACATGTGTAG

Upstream 100 bases:

>100_bases
GGAGAGCTTGAGGGCCTGTCCACTGAGTTCCAGCATTCTGGGGGAATGATAGCTCCCTCTGAACGATTTTTGAATAGGGA
TTCGATTGTAGAATGGCCAT

Downstream 100 bases:

>100_bases
ATCGCTCCCTCACGGTCGCGGTTCGCGGCGGATCATAGGCGGAGCGCAAGATTGGCGGGGCGCGCGGGGAGTTGCGGAGG
ATCGGAAAAACGAAGCCGAT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAVESSALLDETGRNLLSALQEDARLSYAELGRRIGLSPAATAERLRRMEEAEIITGYRVEIDREALGLPVLAIVRMSCD
GAKYRPFLKAVKGMEGVVECHHVAGGDAFILKVVAGSVGDLGRVVEKLLDFGVPTTSIVFSSPVERRELKVAHV

Sequences:

>Translated_154_residues
MAVESSALLDETGRNLLSALQEDARLSYAELGRRIGLSPAATAERLRRMEEAEIITGYRVEIDREALGLPVLAIVRMSCD
GAKYRPFLKAVKGMEGVVECHHVAGGDAFILKVVAGSVGDLGRVVEKLLDFGVPTTSIVFSSPVERRELKVAHV
>Mature_153_residues
AVESSALLDETGRNLLSALQEDARLSYAELGRRIGLSPAATAERLRRMEEAEIITGYRVEIDREALGLPVLAIVRMSCDG
AKYRPFLKAVKGMEGVVECHHVAGGDAFILKVVAGSVGDLGRVVEKLLDFGVPTTSIVFSSPVERRELKVAHV

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787116, Length=108, Percent_Identity=37.962962962963, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1790182, Length=146, Percent_Identity=29.4520547945205, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16662; Mature: 16530

Theoretical pI: Translated: 6.27; Mature: 6.27

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVESSALLDETGRNLLSALQEDARLSYAELGRRIGLSPAATAERLRRMEEAEIITGYRV
CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEE
EIDREALGLPVLAIVRMSCDGAKYRPFLKAVKGMEGVVECHHVAGGDAFILKVVAGSVGD
EECHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH
LGRVVEKLLDFGVPTTSIVFSSPVERRELKVAHV
HHHHHHHHHHCCCCHHHHHCCCCCHHHHEEECCC
>Mature Secondary Structure 
AVESSALLDETGRNLLSALQEDARLSYAELGRRIGLSPAATAERLRRMEEAEIITGYRV
CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCEEE
EIDREALGLPVLAIVRMSCDGAKYRPFLKAVKGMEGVVECHHVAGGDAFILKVVAGSVGD
EECHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCH
LGRVVEKLLDFGVPTTSIVFSSPVERRELKVAHV
HHHHHHHHHHCCCCHHHHHCCCCCHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]