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The map label for this gene is 116624164

Identifier: 116624164

GI number: 116624164

Start: 6416464

End: 6417054

Strand: Reverse

Name: 116624164

Synonym: Acid_5080

Alternate gene names: NA

Gene position: 6417054-6416464 (Counterclockwise)

Preceding gene: 116624165

Following gene: 116624163

Centisome position: 64.39

GC content: 64.64

Gene sequence:

>591_bases
GTGCCCGACGATCTCTCCGGTGACGTGACCCGCTGTCTGTCCCAAATTCGCGCCGGGTCCCCCGAAGCCAAATCGCAGCT
TTTGCTTCTTGTCATGGCGGAACTGCGCCGCATGGCGGAGCGGATGATGCGCGCCGAACGCCTGAATCATACCCTACAGC
CTACGGCACTGGTCAACGAACTCTACCTCCACCTGCTCACGGGCAACCGGATGGACGTGCAGGACCGCAGCCATTTCTTC
GCGCTCGCCGCAATCGCGATGCGCCGCATCCTGGTGGACCATGCGCGCGCCAAGCGCAGCCAGAAGCGCGGCGGACAGCA
ACTGCGCGTGGAGATGGAAGGTCTCGCGCTGGCGGCGCCCGGCAACTTTTCGCAGATGCTCGAGCTCGACCAGGCGCTCG
ACCGCCTGGCCAAAATCGACCCCCGCCAGTGCCGCGTCGTGGAACTCCGTTATTTTGCCGGGCTCGACGAAGAGGAGATC
GCGCTTCAGCTCGGCATCTCCGGCCGCACCGTCAAACGCGATTGGGCCATGGCGAAAGCCTGGCTCTATGGCGAGCTTCA
GCCCAAAGCGCCGCGCCCCGCTGCAGTATAA

Upstream 100 bases:

>100_bases
CGGGCCGTCGATCCTGGTAACGAGCCGCAGGTAACCCGCGATTGCTCCACCGAGCCGCGAGCGCTAGGGAGCGATCTCTT
TCGGGTAGAATCTAGGGAAC

Downstream 100 bases:

>100_bases
TCGCTCAGAGCAAGGAGGGAATCAGGATGCCGGACCTCAAAGCCTTACAGGGCACCTGGAAGATCGTGTCGCTCGAAATG
GACGGGAGCGCTATGCCATC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-E Factor; Sigma-70 Region 4 Family; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MPDDLSGDVTRCLSQIRAGSPEAKSQLLLLVMAELRRMAERMMRAERLNHTLQPTALVNELYLHLLTGNRMDVQDRSHFF
ALAAIAMRRILVDHARAKRSQKRGGQQLRVEMEGLALAAPGNFSQMLELDQALDRLAKIDPRQCRVVELRYFAGLDEEEI
ALQLGISGRTVKRDWAMAKAWLYGELQPKAPRPAAV

Sequences:

>Translated_196_residues
MPDDLSGDVTRCLSQIRAGSPEAKSQLLLLVMAELRRMAERMMRAERLNHTLQPTALVNELYLHLLTGNRMDVQDRSHFF
ALAAIAMRRILVDHARAKRSQKRGGQQLRVEMEGLALAAPGNFSQMLELDQALDRLAKIDPRQCRVVELRYFAGLDEEEI
ALQLGISGRTVKRDWAMAKAWLYGELQPKAPRPAAV
>Mature_195_residues
PDDLSGDVTRCLSQIRAGSPEAKSQLLLLVMAELRRMAERMMRAERLNHTLQPTALVNELYLHLLTGNRMDVQDRSHFFA
LAAIAMRRILVDHARAKRSQKRGGQQLRVEMEGLALAAPGNFSQMLELDQALDRLAKIDPRQCRVVELRYFAGLDEEEIA
LQLGISGRTVKRDWAMAKAWLYGELQPKAPRPAAV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22143; Mature: 22012

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDDLSGDVTRCLSQIRAGSPEAKSQLLLLVMAELRRMAERMMRAERLNHTLQPTALVNE
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LYLHLLTGNRMDVQDRSHFFALAAIAMRRILVDHARAKRSQKRGGQQLRVEMEGLALAAP
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECC
GNFSQMLELDQALDRLAKIDPRQCRVVELRYFAGLDEEEIALQLGISGRTVKRDWAMAKA
CCHHHHHHHHHHHHHHHCCCCCHHHEEEEHHHHCCCHHHEEEEECCCCCCHHHHHHHHHH
WLYGELQPKAPRPAAV
HHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PDDLSGDVTRCLSQIRAGSPEAKSQLLLLVMAELRRMAERMMRAERLNHTLQPTALVNE
CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LYLHLLTGNRMDVQDRSHFFALAAIAMRRILVDHARAKRSQKRGGQQLRVEMEGLALAAP
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECC
GNFSQMLELDQALDRLAKIDPRQCRVVELRYFAGLDEEEIALQLGISGRTVKRDWAMAKA
CCHHHHHHHHHHHHHHHCCCCCHHHEEEEHHHHCCCHHHEEEEECCCCCCHHHHHHHHHH
WLYGELQPKAPRPAAV
HHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA