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The map label for this gene is ycgM [C]

Identifier: 116624056

GI number: 116624056

Start: 6277118

End: 6277927

Strand: Direct

Name: ycgM [C]

Synonym: Acid_4970

Alternate gene names: 116624056

Gene position: 6277118-6277927 (Clockwise)

Preceding gene: 116624053

Following gene: 116624057

Centisome position: 62.99

GC content: 60.99

Gene sequence:

>810_bases
GTGATCGTGGACGGGTTGTTGATTCGTCTCAAAGATGCGGGCTTCCACGACGTGCACGACCTGATCGCGGGCGGCGCCGA
CGCCATGGATCGCGTGGTGCGATGGGTGAATCACTCGCCAGGCGGGGAGGTCTTCGACGTGGCCGGAATGAAACTGCGGT
CGCCCCTCCAGCGGCCGGGCAAGATCATCTGCATCGGCCTGAATTACCGCGATCACGCCGAGGAAGCGAAGATGCCGATC
CCGGAAACACCGACCGTGTTCGCCAAGTGGGGCAACACCGTCACCGGGCATCAGCATCCGATCGTGCTGCCGAAGAATTC
CAGAAAGCCGGATTATGAAGCGGAACTCGCGGTGGTAATCGGCAAGGGCGGACGCCACATTGCGGAGGCGAACTGGCGCG
AGCACGTCTTTGGATACACGATCCTCAACGACGTGAGCGCGCGCGATTTTCAGATGGCGACCAGCCAGTGGACGATCGGC
AAGACTTTCGACACCTTCGCTCCGATTGGCCCGTGGATCGTCACCACCGACGAAATCGAAGATCCCGGCGCGCTCCGAAT
CTCGCTCACGCTAAACAGCGTGACCATGCAGGATTCGAACACCAGTAATTTGATTTTCGGAATTCCGAAACTGATCGCGT
ATTTATCGAGCGTGATGTCGCTCGAACCGGGCGACATCATTTCGACCGGGACGCCCGCCGGGGTAGGCTTCGCCCAGAAA
CCCCCGCGATGGCTGGTTCCCGGGGACGTGTGCGCGATTCAGGTGGGGGGAATCGGCGAGCTGGTGAACCCGGTGATCGC
CGAAGCGTAG

Upstream 100 bases:

>100_bases
GAGTGAGAAGAGCTCTGGTGTGTTCATTGGGTTTACACTCAATATACAACGAGATATGCGCTTCCTTACTTTGCAGCTGG
AGTCTAGAACCGAGCCGGCC

Downstream 100 bases:

>100_bases
TTCCTGCTAAAATCAAACAGGCGTGCGCCCGTAGCTCAGTTGGATAGAGTGGCTGACTTCGAATCAGTAGGTCGGGAGTT
CGAATCTCTCCGGGCGCACC

Product: 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MIVDGLLIRLKDAGFHDVHDLIAGGADAMDRVVRWVNHSPGGEVFDVAGMKLRSPLQRPGKIICIGLNYRDHAEEAKMPI
PETPTVFAKWGNTVTGHQHPIVLPKNSRKPDYEAELAVVIGKGGRHIAEANWREHVFGYTILNDVSARDFQMATSQWTIG
KTFDTFAPIGPWIVTTDEIEDPGALRISLTLNSVTMQDSNTSNLIFGIPKLIAYLSSVMSLEPGDIISTGTPAGVGFAQK
PPRWLVPGDVCAIQVGGIGELVNPVIAEA

Sequences:

>Translated_269_residues
MIVDGLLIRLKDAGFHDVHDLIAGGADAMDRVVRWVNHSPGGEVFDVAGMKLRSPLQRPGKIICIGLNYRDHAEEAKMPI
PETPTVFAKWGNTVTGHQHPIVLPKNSRKPDYEAELAVVIGKGGRHIAEANWREHVFGYTILNDVSARDFQMATSQWTIG
KTFDTFAPIGPWIVTTDEIEDPGALRISLTLNSVTMQDSNTSNLIFGIPKLIAYLSSVMSLEPGDIISTGTPAGVGFAQK
PPRWLVPGDVCAIQVGGIGELVNPVIAEA
>Mature_269_residues
MIVDGLLIRLKDAGFHDVHDLIAGGADAMDRVVRWVNHSPGGEVFDVAGMKLRSPLQRPGKIICIGLNYRDHAEEAKMPI
PETPTVFAKWGNTVTGHQHPIVLPKNSRKPDYEAELAVVIGKGGRHIAEANWREHVFGYTILNDVSARDFQMATSQWTIG
KTFDTFAPIGPWIVTTDEIEDPGALRISLTLNSVTMQDSNTSNLIFGIPKLIAYLSSVMSLEPGDIISTGTPAGVGFAQK
PPRWLVPGDVCAIQVGGIGELVNPVIAEA

Specific function: Unknown

COG id: COG0179

COG function: function code Q; 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAH family [H]

Homologues:

Organism=Homo sapiens, GI156231349, Length=215, Percent_Identity=43.7209302325581, Blast_Score=206, Evalue=3e-53,
Organism=Homo sapiens, GI40786394, Length=215, Percent_Identity=42.7906976744186, Blast_Score=198, Evalue=4e-51,
Organism=Homo sapiens, GI215422413, Length=179, Percent_Identity=37.9888268156425, Blast_Score=130, Evalue=9e-31,
Organism=Homo sapiens, GI13654274, Length=179, Percent_Identity=37.9888268156425, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI66348062, Length=179, Percent_Identity=37.9888268156425, Blast_Score=130, Evalue=1e-30,
Organism=Escherichia coli, GI1787428, Length=180, Percent_Identity=33.8888888888889, Blast_Score=114, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI17557057, Length=179, Percent_Identity=37.9888268156425, Blast_Score=127, Evalue=6e-30,
Organism=Saccharomyces cerevisiae, GI6324161, Length=231, Percent_Identity=30.7359307359307, Blast_Score=89, Evalue=6e-19,
Organism=Drosophila melanogaster, GI28572127, Length=253, Percent_Identity=40.7114624505929, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI24663695, Length=227, Percent_Identity=35.6828193832599, Blast_Score=147, Evalue=8e-36,
Organism=Drosophila melanogaster, GI28571789, Length=178, Percent_Identity=38.7640449438202, Blast_Score=122, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002529
- InterPro:   IPR011234 [H]

Pfam domain/function: PF01557 FAA_hydrolase [H]

EC number: NA

Molecular weight: Translated: 29137; Mature: 29137

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVDGLLIRLKDAGFHDVHDLIAGGADAMDRVVRWVNHSPGGEVFDVAGMKLRSPLQRPG
CCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHCCCC
KIICIGLNYRDHAEEAKMPIPETPTVFAKWGNTVTGHQHPIVLPKNSRKPDYEAELAVVI
CEEEEECCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEE
GKGGRHIAEANWREHVFGYTILNDVSARDFQMATSQWTIGKTFDTFAPIGPWIVTTDEIE
CCCCCEEECCCCHHHHEEEEEECCCCCCCEEEECCCEECCCCHHCCCCCCCEEEEECCCC
DPGALRISLTLNSVTMQDSNTSNLIFGIPKLIAYLSSVMSLEPGDIISTGTPAGVGFAQK
CCCEEEEEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC
PPRWLVPGDVCAIQVGGIGELVNPVIAEA
CCCEECCCCEEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MIVDGLLIRLKDAGFHDVHDLIAGGADAMDRVVRWVNHSPGGEVFDVAGMKLRSPLQRPG
CCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHCCCC
KIICIGLNYRDHAEEAKMPIPETPTVFAKWGNTVTGHQHPIVLPKNSRKPDYEAELAVVI
CEEEEECCCCCCHHHCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEEEEE
GKGGRHIAEANWREHVFGYTILNDVSARDFQMATSQWTIGKTFDTFAPIGPWIVTTDEIE
CCCCCEEECCCCHHHHEEEEEECCCCCCCEEEECCCEECCCCHHCCCCCCCEEEEECCCC
DPGALRISLTLNSVTMQDSNTSNLIFGIPKLIAYLSSVMSLEPGDIISTGTPAGVGFAQK
CCCEEEEEEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC
PPRWLVPGDVCAIQVGGIGELVNPVIAEA
CCCEECCCCEEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]