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The map label for this gene is yfbE [C]

Identifier: 116623948

GI number: 116623948

Start: 6137488

End: 6138714

Strand: Direct

Name: yfbE [C]

Synonym: Acid_4860

Alternate gene names: 116623948

Gene position: 6137488-6138714 (Clockwise)

Preceding gene: 116623947

Following gene: 116623949

Centisome position: 61.59

GC content: 63.08

Gene sequence:

>1227_bases
GTGATTGCCCCATTCATCCACTTTCACCGGCCCTCAATCGGCGAAGAAGAAATCAGCGAAGTCGTGGAGACGCTGCGCTC
CGGATGGCTGACCACTGGCCCGCGCGCGGCCCGCTTCGAGCGCGACTTCCAGGAGTACACCGGCGCACCGCACGCGGTTG
CCGTGAATTCGGCAACCGCCGGGTTGCACATTGCGCTGGCCGCGCTCAAGATCGGACCCGGCGACGAAGTGATCACGACA
CCGATGACCTTCTGCGCCACCGTGCAAACCATTCTGCACGTGGGAGCCACACCGGTGCTGGCGGATATCGGATGGGACGG
CAATATCGACCCGCAGGAGATCGCCGCCCGGATCACGGACCGCACGAAGGCGATCATCCCGGTGCACATGGCGGGATTGC
CCTGCGACATGGCGTCCATCTGGTCGCTGGCACGGAAGCACGGAATTCACGTGATTGAGGACGCGGCACACGCGGCCGGC
GCGCGCTACGCGGGGCTGCCGATCGGCTCAGGCGAGAGCGATGCCGTAGCGTTCAGTTTTTATGCCACCAAGAACCTGAC
TACCGGGGAAGGCGGCATGATTACCACGCAGCGCGAGGAGCTGGCACAGACCATGCGGATGCTGGCGCTTCACGGTGTCA
GCCACGAAGCGTGGGATCGCTACTCGGAAAAAGGGAGCTGGCAGTACGACGTACTGGCGCATGGATTCAAGTACAACCTG
AGCGACATTCAGGCGGCGCTCGGCATCCATCAGTTGCGCAAGCTGGACGAGTTTATCGAGCGGCGCACGCGATATGCACG
GATGTACGACACCGCGTTCGCCGGCATGGAAGAAGTGGAAACGCCGCCCGATAATCCGCAGTGCAGGCACGCGTGGCACC
TCTACATTCCACGGCTCAACCTGCGGCGGCTTAAGCTCAATCGCGCCAGGTTTATCCGCGAGCTGCAGCAGCGGGGCATC
GGCACCAGCGTGCACTTCATCCCGATTCCGCTGCTTCGCTATTTCGCGCGGCTGCCGCTGGCGCAGTATGCATGTCCGCG
AGCGCTCGATCTCTATCCGCGGATTGTCTCACTGCCGCTGTATCCGGCGATGACCGAGGAGCAGGTGCAATATGTGGCCC
GGAATGTCCGGGAGCTCCTCGAAAGTTCCAGACGAGGAAGGTTAGTGGCGGCAGGCACACCGGCCGCGATGGTCCCGGCC
ACTGTCTCGGACATTGCCGGCTCTTAG

Upstream 100 bases:

>100_bases
GAGACCTGAAGCTGATTGGCTTGACGATTCGGTACAGCCTCTTCCCGGAGCACTTCGACCCGGAATTGATCAAGAGAACC
CTCGGTACGGAGGTCTTAAA

Downstream 100 bases:

>100_bases
GAGGGATGCATATGAAAAACCATCGGAATATCGATGTCTGGCTGGAGCGTGCGTGCCATCTCACGGTGGTCGGGCTATCA
CTGACGGCGGCATTCCTGCT

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MIAPFIHFHRPSIGEEEISEVVETLRSGWLTTGPRAARFERDFQEYTGAPHAVAVNSATAGLHIALAALKIGPGDEVITT
PMTFCATVQTILHVGATPVLADIGWDGNIDPQEIAARITDRTKAIIPVHMAGLPCDMASIWSLARKHGIHVIEDAAHAAG
ARYAGLPIGSGESDAVAFSFYATKNLTTGEGGMITTQREELAQTMRMLALHGVSHEAWDRYSEKGSWQYDVLAHGFKYNL
SDIQAALGIHQLRKLDEFIERRTRYARMYDTAFAGMEEVETPPDNPQCRHAWHLYIPRLNLRRLKLNRARFIRELQQRGI
GTSVHFIPIPLLRYFARLPLAQYACPRALDLYPRIVSLPLYPAMTEEQVQYVARNVRELLESSRRGRLVAAGTPAAMVPA
TVSDIAGS

Sequences:

>Translated_408_residues
MIAPFIHFHRPSIGEEEISEVVETLRSGWLTTGPRAARFERDFQEYTGAPHAVAVNSATAGLHIALAALKIGPGDEVITT
PMTFCATVQTILHVGATPVLADIGWDGNIDPQEIAARITDRTKAIIPVHMAGLPCDMASIWSLARKHGIHVIEDAAHAAG
ARYAGLPIGSGESDAVAFSFYATKNLTTGEGGMITTQREELAQTMRMLALHGVSHEAWDRYSEKGSWQYDVLAHGFKYNL
SDIQAALGIHQLRKLDEFIERRTRYARMYDTAFAGMEEVETPPDNPQCRHAWHLYIPRLNLRRLKLNRARFIRELQQRGI
GTSVHFIPIPLLRYFARLPLAQYACPRALDLYPRIVSLPLYPAMTEEQVQYVARNVRELLESSRRGRLVAAGTPAAMVPA
TVSDIAGS
>Mature_408_residues
MIAPFIHFHRPSIGEEEISEVVETLRSGWLTTGPRAARFERDFQEYTGAPHAVAVNSATAGLHIALAALKIGPGDEVITT
PMTFCATVQTILHVGATPVLADIGWDGNIDPQEIAARITDRTKAIIPVHMAGLPCDMASIWSLARKHGIHVIEDAAHAAG
ARYAGLPIGSGESDAVAFSFYATKNLTTGEGGMITTQREELAQTMRMLALHGVSHEAWDRYSEKGSWQYDVLAHGFKYNL
SDIQAALGIHQLRKLDEFIERRTRYARMYDTAFAGMEEVETPPDNPQCRHAWHLYIPRLNLRRLKLNRARFIRELQQRGI
GTSVHFIPIPLLRYFARLPLAQYACPRALDLYPRIVSLPLYPAMTEEQVQYVARNVRELLESSRRGRLVAAGTPAAMVPA
TVSDIAGS

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=381, Percent_Identity=43.5695538057743, Blast_Score=283, Evalue=1e-77,
Organism=Escherichia coli, GI2367285, Length=331, Percent_Identity=31.7220543806647, Blast_Score=135, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 45240; Mature: 45240

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAPFIHFHRPSIGEEEISEVVETLRSGWLTTGPRAARFERDFQEYTGAPHAVAVNSATA
CCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCC
GLHIALAALKIGPGDEVITTPMTFCATVQTILHVGATPVLADIGWDGNIDPQEIAARITD
HHEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH
RTKAIIPVHMAGLPCDMASIWSLARKHGIHVIEDAAHAAGARYAGLPIGSGESDAVAFSF
CCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEE
YATKNLTTGEGGMITTQREELAQTMRMLALHGVSHEAWDRYSEKGSWQYDVLAHGFKYNL
EEECCCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHHCCCCCCH
SDIQAALGIHQLRKLDEFIERRTRYARMYDTAFAGMEEVETPPDNPQCRHAWHLYIPRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCC
LRRLKLNRARFIRELQQRGIGTSVHFIPIPLLRYFARLPLAQYACPRALDLYPRIVSLPL
HHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHCCC
YPAMTEEQVQYVARNVRELLESSRRGRLVAAGTPAAMVPATVSDIAGS
CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCHHHHHHCCC
>Mature Secondary Structure
MIAPFIHFHRPSIGEEEISEVVETLRSGWLTTGPRAARFERDFQEYTGAPHAVAVNSATA
CCCCCEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCC
GLHIALAALKIGPGDEVITTPMTFCATVQTILHVGATPVLADIGWDGNIDPQEIAARITD
HHEEEEEEEEECCCCCEEECHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH
RTKAIIPVHMAGLPCDMASIWSLARKHGIHVIEDAAHAAGARYAGLPIGSGESDAVAFSF
CCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEHHHHHHCCCCCCCCCCCCCCCCCEEEEE
YATKNLTTGEGGMITTQREELAQTMRMLALHGVSHEAWDRYSEKGSWQYDVLAHGFKYNL
EEECCCCCCCCCEEECCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEHHHHCCCCCCH
SDIQAALGIHQLRKLDEFIERRTRYARMYDTAFAGMEEVETPPDNPQCRHAWHLYIPRLN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCEEEEEECCCC
LRRLKLNRARFIRELQQRGIGTSVHFIPIPLLRYFARLPLAQYACPRALDLYPRIVSLPL
HHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHCCC
YPAMTEEQVQYVARNVRELLESSRRGRLVAAGTPAAMVPATVSDIAGS
CCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]