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The map label for this gene is ybfF [C]

Identifier: 116623723

GI number: 116623723

Start: 5864771

End: 5865433

Strand: Direct

Name: ybfF [C]

Synonym: Acid_4635

Alternate gene names: 116623723

Gene position: 5864771-5865433 (Clockwise)

Preceding gene: 116623722

Following gene: 116623724

Centisome position: 58.85

GC content: 55.66

Gene sequence:

>663_bases
GTGATTGTACCGGCATACAACGAAGGTCCCGTCATTCAAGCGACGGTTCGCGACCTTCTCGGTGCGGGGTACGAGGTCAT
CATTGTGGATGATGGGTCTCAGGACGGCACTGCCGCCGTTCGTGAACTGCCCGTGGTCTACATTCGGCATGCCATCAACC
TTGGACAGGGCGCTGCCCTTCAGACAGGCATGACGTACGCCTTGCGAGCCGGCGCCGATATCGCCGTTACTTTCGACGCC
GACGGTCAACATGATTCCCGGCAGATCGGCAGGCTGCTCGCGCCGATAATCGATGGATCTGCGGATGTAGTCCTTGGATC
TCGTTTTTTGCGGAAGGAAGATGATGCTCAGGTTCCACTCAAGAAACGCATCCTCCTTCGCGGAGGGATTCTTGTCTCGT
GGCTGCTGGCCGGGGTTCGTCTGTCAGACACCCACAACGGCTTTCGCGCACTGTCCCGGCGTGCCCTGGAACTTGTACAC
ATTCAGGAGAATGGGTTCGCGCACGCCACGGAGCTTCTAGAGGTCATTCGCAAGTCCGGATTGCGACTTGTAGAGGTCCC
TACTACGGTGATTTACACCGAATACTCGATTCGGAAGGGGCAGCATATTTCGAATTCCGTGAACATTGTATTCGATCTTC
TTCTCTCCAAGTTTTTCAGATGA

Upstream 100 bases:

>100_bases
TCAATTGGTGGGACGATATTCCGGAATGACCCTGGTCCGTGTGGGCAGATAATCTCCAGTTGCTATAATTGTCAAAATGC
TGGATCCCAAAAGGGTAATG

Downstream 100 bases:

>100_bases
TTCCTGTTCAACCGATATTAATTGCCGCATTGGTGGCTGTAGTTCTGCTCTATTTCTCACGGCTGCGAACCAAGATCGCG
GATGGACTGATCATCCTGGT

Product: glycosyl transferase family protein

Products: GDP; dolichyl D-mannosyl phosphate

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MIVPAYNEGPVIQATVRDLLGAGYEVIIVDDGSQDGTAAVRELPVVYIRHAINLGQGAALQTGMTYALRAGADIAVTFDA
DGQHDSRQIGRLLAPIIDGSADVVLGSRFLRKEDDAQVPLKKRILLRGGILVSWLLAGVRLSDTHNGFRALSRRALELVH
IQENGFAHATELLEVIRKSGLRLVEVPTTVIYTEYSIRKGQHISNSVNIVFDLLLSKFFR

Sequences:

>Translated_220_residues
MIVPAYNEGPVIQATVRDLLGAGYEVIIVDDGSQDGTAAVRELPVVYIRHAINLGQGAALQTGMTYALRAGADIAVTFDA
DGQHDSRQIGRLLAPIIDGSADVVLGSRFLRKEDDAQVPLKKRILLRGGILVSWLLAGVRLSDTHNGFRALSRRALELVH
IQENGFAHATELLEVIRKSGLRLVEVPTTVIYTEYSIRKGQHISNSVNIVFDLLLSKFFR
>Mature_220_residues
MIVPAYNEGPVIQATVRDLLGAGYEVIIVDDGSQDGTAAVRELPVVYIRHAINLGQGAALQTGMTYALRAGADIAVTFDA
DGQHDSRQIGRLLAPIIDGSADVVLGSRFLRKEDDAQVPLKKRILLRGGILVSWLLAGVRLSDTHNGFRALSRRALELVH
IQENGFAHATELLEVIRKSGLRLVEVPTTVIYTEYSIRKGQHISNSVNIVFDLLLSKFFR

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4503363, Length=207, Percent_Identity=28.0193236714976, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71999402, Length=205, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24585265, Length=212, Percent_Identity=29.2452830188679, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.83

Molecular weight: Translated: 24066; Mature: 24066

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVPAYNEGPVIQATVRDLLGAGYEVIIVDDGSQDGTAAVRELPVVYIRHAINLGQGAAL
CEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCH
QTGMTYALRAGADIAVTFDADGQHDSRQIGRLLAPIIDGSADVVLGSRFLRKEDDAQVPL
HHCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCH
KKRILLRGGILVSWLLAGVRLSDTHNGFRALSRRALELVHIQENGFAHATELLEVIRKSG
HHHHHHHCCHHHHHHHHCCEEECCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCC
LRLVEVPTTVIYTEYSIRKGQHISNSVNIVFDLLLSKFFR
CEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIVPAYNEGPVIQATVRDLLGAGYEVIIVDDGSQDGTAAVRELPVVYIRHAINLGQGAAL
CEECCCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCH
QTGMTYALRAGADIAVTFDADGQHDSRQIGRLLAPIIDGSADVVLGSRFLRKEDDAQVPL
HHCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCH
KKRILLRGGILVSWLLAGVRLSDTHNGFRALSRRALELVHIQENGFAHATELLEVIRKSG
HHHHHHHCCHHHHHHHHCCEEECCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCC
LRLVEVPTTVIYTEYSIRKGQHISNSVNIVFDLLLSKFFR
CEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: GDPmannose; dolichyl phosphate

Specific reaction: GDP-mannose + dolichyl phosphate = GDP + dolichyl D-mannosyl phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]