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The map label for this gene is ydaM [H]

Identifier: 116623715

GI number: 116623715

Start: 5854158

End: 5855192

Strand: Direct

Name: ydaM [H]

Synonym: Acid_4627

Alternate gene names: 116623715

Gene position: 5854158-5855192 (Clockwise)

Preceding gene: 116623713

Following gene: 116623716

Centisome position: 58.74

GC content: 61.06

Gene sequence:

>1035_bases
GTGATCTCTTTGAAGAAATTGATCGAGTCGAATCAAAAGGAATGGGCCGAGGCGGCACTCGCCGCGTACTGCGCCGCATT
GGAGGCGATGGGCAACAGCGGCGTCCGCGCCTGTCCTCCGCTGGGTATGCAATTGCAGCTCGGGCTTTCCGCGCTGCAGC
GTCAACTGTCTGACAACTCGACGGTTAGCGGAGTTCGGGAGACGCAGCAGCGAGTGGAATCCGAATTGGGCCAATGGGGT
GAGCGTTCCGCGGAATATTACAAGGGTAAAACCGAAGAGTTCAAAGAGATCATGATGATCATGGCGCGGACCGCGGAAAC
CGTTGGTGATCGCGACCAGCGATATTCCGCGCAACTCACCGAATTCACCAGCAAACTGCACTCGCTGGCGAGCATGGATG
ACCTGGGCAGGATTCGCGATTCGCTGGTTTTACGCGCACGGGAATTGCAGGACCGAGTGGACCAGATGGCTCGCGATGGC
CAGCAGATGTTGGCTCAAATGCGCGGCGAACTCCGGCATTACCAGGCGAGGTTGGAGGAAGCCGAGCGCCTGGCATCGCT
GGATCCGCTGACGGGTTTGAAGAACCGGCGCCGGATGGAACGGGCTGTGGCGGAACGCATGGGCCGCGAACAGCCGTTTT
CGGTTGTGCTTCTGGATCTCAATGGCTTCAAGCAGGTCAACGACTCTTATGGCCACGCCGCGGGAGACGATGTCCTGAAA
CAGTTCGCCACCGAGTTGCGCTCCGCGTTTCGCGCCGCGGACGATGTAGGCCGCTGGGGCGGCGATGAATTCGTGGTGTT
GCTGGATTGCGGCCCGGAAGACGTGGGGCGCCATCTGGAACGCGTGCGGCAGTGGGTATTCGGAGATTACGTGGTGCAAG
ACCAGGGGGTGCCGCACAGGCTGCCGATCATCGCTTCGGTAGGCACGGCTGTCTGGCAGGGCGGAGAGAGCATGGCGGAG
TTGTTCGCGCGCGCCGACCGGGACATGTACCAGGAGAAGAATGCCGTCAGGCAGCGGGAGGCGAAACCGGCATGA

Upstream 100 bases:

>100_bases
CGAAGGGAACGATTGCCTCCAATAACAATTTGCTATCAGAACCATAAACATTGCGTGAGGATCGCGGAGAATTCACAGAT
TCTTGCCGATACGTGAGTTA

Downstream 100 bases:

>100_bases
AACGCATCTGTACCGACCCGGCCGAAGATCGCCATGCCAGGGCCCTCCGATACGGCTGCGCGGCGCTCGCGCTCGCCTTG
TGTCTGGCGTTGGTTCGGTC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 344; Mature: 344

Protein sequence:

>344_residues
MISLKKLIESNQKEWAEAALAAYCAALEAMGNSGVRACPPLGMQLQLGLSALQRQLSDNSTVSGVRETQQRVESELGQWG
ERSAEYYKGKTEEFKEIMMIMARTAETVGDRDQRYSAQLTEFTSKLHSLASMDDLGRIRDSLVLRARELQDRVDQMARDG
QQMLAQMRGELRHYQARLEEAERLASLDPLTGLKNRRRMERAVAERMGREQPFSVVLLDLNGFKQVNDSYGHAAGDDVLK
QFATELRSAFRAADDVGRWGGDEFVVLLDCGPEDVGRHLERVRQWVFGDYVVQDQGVPHRLPIIASVGTAVWQGGESMAE
LFARADRDMYQEKNAVRQREAKPA

Sequences:

>Translated_344_residues
MISLKKLIESNQKEWAEAALAAYCAALEAMGNSGVRACPPLGMQLQLGLSALQRQLSDNSTVSGVRETQQRVESELGQWG
ERSAEYYKGKTEEFKEIMMIMARTAETVGDRDQRYSAQLTEFTSKLHSLASMDDLGRIRDSLVLRARELQDRVDQMARDG
QQMLAQMRGELRHYQARLEEAERLASLDPLTGLKNRRRMERAVAERMGREQPFSVVLLDLNGFKQVNDSYGHAAGDDVLK
QFATELRSAFRAADDVGRWGGDEFVVLLDCGPEDVGRHLERVRQWVFGDYVVQDQGVPHRLPIIASVGTAVWQGGESMAE
LFARADRDMYQEKNAVRQREAKPA
>Mature_344_residues
MISLKKLIESNQKEWAEAALAAYCAALEAMGNSGVRACPPLGMQLQLGLSALQRQLSDNSTVSGVRETQQRVESELGQWG
ERSAEYYKGKTEEFKEIMMIMARTAETVGDRDQRYSAQLTEFTSKLHSLASMDDLGRIRDSLVLRARELQDRVDQMARDG
QQMLAQMRGELRHYQARLEEAERLASLDPLTGLKNRRRMERAVAERMGREQPFSVVLLDLNGFKQVNDSYGHAAGDDVLK
QFATELRSAFRAADDVGRWGGDEFVVLLDCGPEDVGRHLERVRQWVFGDYVVQDQGVPHRLPIIASVGTAVWQGGESMAE
LFARADRDMYQEKNAVRQREAKPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=171, Percent_Identity=40.9356725146199, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=32.9113924050633, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=33.75, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787262, Length=183, Percent_Identity=31.1475409836066, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=37.888198757764, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=157, Percent_Identity=34.3949044585987, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787541, Length=164, Percent_Identity=32.3170731707317, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788956, Length=184, Percent_Identity=30.4347826086957, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=28.8888888888889, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87081977, Length=162, Percent_Identity=30.2469135802469, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 38770; Mature: 38770

Theoretical pI: Translated: 5.56; Mature: 5.56

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLKKLIESNQKEWAEAALAAYCAALEAMGNSGVRACPPLGMQLQLGLSALQRQLSDNS
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
TVSGVRETQQRVESELGQWGERSAEYYKGKTEEFKEIMMIMARTAETVGDRDQRYSAQLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EFTSKLHSLASMDDLGRIRDSLVLRARELQDRVDQMARDGQQMLAQMRGELRHYQARLEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AERLASLDPLTGLKNRRRMERAVAERMGREQPFSVVLLDLNGFKQVNDSYGHAAGDDVLK
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHHH
QFATELRSAFRAADDVGRWGGDEFVVLLDCGPEDVGRHLERVRQWVFGDYVVQDQGVPHR
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCHHEECCCCCCC
LPIIASVGTAVWQGGESMAELFARADRDMYQEKNAVRQREAKPA
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MISLKKLIESNQKEWAEAALAAYCAALEAMGNSGVRACPPLGMQLQLGLSALQRQLSDNS
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
TVSGVRETQQRVESELGQWGERSAEYYKGKTEEFKEIMMIMARTAETVGDRDQRYSAQLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
EFTSKLHSLASMDDLGRIRDSLVLRARELQDRVDQMARDGQQMLAQMRGELRHYQARLEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AERLASLDPLTGLKNRRRMERAVAERMGREQPFSVVLLDLNGFKQVNDSYGHAAGDDVLK
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHHH
QFATELRSAFRAADDVGRWGGDEFVVLLDCGPEDVGRHLERVRQWVFGDYVVQDQGVPHR
HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCHHEECCCCCCC
LPIIASVGTAVWQGGESMAELFARADRDMYQEKNAVRQREAKPA
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]