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The map label for this gene is allB [C]

Identifier: 116623700

GI number: 116623700

Start: 5831027

End: 5832424

Strand: Direct

Name: allB [C]

Synonym: Acid_4612

Alternate gene names: 116623700

Gene position: 5831027-5832424 (Clockwise)

Preceding gene: 116623696

Following gene: 116623701

Centisome position: 58.51

GC content: 65.45

Gene sequence:

>1398_bases
ATGATACGCGCTGCACTTTTGGTATTGATGGCACTTCCGATGTATGGGCAGACGTACGATCTGGTGATCGCCAACGGGCG
GGTGCTGGACCCGGCGAGCAATCTCGATGCGGTGCGGCACATCGGTATTCGCGGTGGGAAGATCGCCGCGGTTTCGACGA
CCCCGCTTGGAGGGCGCGCCACGATCGACGCTACGGGGCTGGTGGTGGCGCCCGGATTCATCGATCTGCATTCGCACGGG
CAGACGCCTGAGAATTACCGCTTCAAGGCGCGCGACGGCGTCACGACGGCGCTGGAATTGGAGGTGGGCGCCAACCCAGT
CGCCGCCTGGTACGCGGAACGCGAAGGCCGCGCGTTGATCAACTTCGGAGCCACCAGCGGCGAACTGCCGGCGCGTATCG
CGGTGATGCATGATACCGGCAAGCTGCTGCCGCGCGATAAAGCGGTGGAGCGCGCGGCTACGGCGGAAGAGTTCACCAAC
GTGCTGACCCGGGTCGGGCGCGGCATCGACGAAGGCGCGCTGGGCATTGGCATGGGAATCGCGTACCTACCGCACGAAAC
GCGCGCCGAGGTGCTGGAGCTATTCCGGCTGGCGGCGCAGCGCAAGGTTCCGGTTTACATCCATATGCGCAATGGCGGTC
CGCTGGAACCGGGCGTGATCGACGCCTTGCAGGAAGTGATCGCCGACGCGGCGGCGTCCGGCGCAAGCGTCCACGTGGTC
CACATCACCAGCATGGGATTGCGCGAGGCTCCGCTATGCCTGGCGATGATCCAAGGGGCACGCGCGCGCGGCCTGGATAT
CACGACTGAGGCCTACCCTTACACAGCGGGCATGACGGACCTGGGGTCCGCGATCTTCGATGAAGGCTGGCAGCAGCGCC
AGGGCGGCATCGGCTTCGGCGACCTGCAATGGGCGGCCACCGGCGAGCGCCTGACCGCGGAGAGCTTTGCCAAATACCGG
CAGCAGGGCGGCTTCGTGGCAATACACTCGATCCCGGAAAACATCGTGCAGCTGGCGATGGCGAACCCGCTGGTGATGAT
CGCGAGCGATGGAATTCTGGAGGAGGGCAAAGGCCATCCGCGCGCTGCCGGAACGTACGCGCGCGTGCTGGGACGCTACG
TTCGCGAGTTGAAGAGCCTGACGCTGATGGAGGCGGTTCGCAAGATGACGCAGATGCCCGCTGACCGGCTGGGCATGCCG
GCGAAGGGACGGATCGCAAATGGGGTCGACGCCGACCTCACGATTTTCGACGCCGCGCACGTGACCGATCGCGCGACCTT
CGAGAGTCCGGCACGGTATTCGGAGGGGATCCCGTATGTGATCGTCGGCGGCACGGTGGTGGTGAATCGCGGCGAGCTGG
TGCCCAACGTAACTCCAGGACACGCCGTGCGTCGATGA

Upstream 100 bases:

>100_bases
GAGCCGGCTGAAAGGCGGCCGTGAGCGGCAAAGACAGATTGGCGACCGCTTCCTGACGGTCGCGGCTCGTTGACGGCGAG
GCACGATACAATTTCCGGTA

Downstream 100 bases:

>100_bases
GCGACTCCCCGTGGCGCGAATCCATCACGGCCGAGGACTACGAGCGGCACATGGCCGCCACCGGCCAACCGCAGGCCAAT
GCCGAGTTGCTGGCGGAGGT

Product: D-glutamate deacylase

Products: NA

Alternate protein names: N-acyl-D-glutamate amidohydrolase [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MIRAALLVLMALPMYGQTYDLVIANGRVLDPASNLDAVRHIGIRGGKIAAVSTTPLGGRATIDATGLVVAPGFIDLHSHG
QTPENYRFKARDGVTTALELEVGANPVAAWYAEREGRALINFGATSGELPARIAVMHDTGKLLPRDKAVERAATAEEFTN
VLTRVGRGIDEGALGIGMGIAYLPHETRAEVLELFRLAAQRKVPVYIHMRNGGPLEPGVIDALQEVIADAAASGASVHVV
HITSMGLREAPLCLAMIQGARARGLDITTEAYPYTAGMTDLGSAIFDEGWQQRQGGIGFGDLQWAATGERLTAESFAKYR
QQGGFVAIHSIPENIVQLAMANPLVMIASDGILEEGKGHPRAAGTYARVLGRYVRELKSLTLMEAVRKMTQMPADRLGMP
AKGRIANGVDADLTIFDAAHVTDRATFESPARYSEGIPYVIVGGTVVVNRGELVPNVTPGHAVRR

Sequences:

>Translated_465_residues
MIRAALLVLMALPMYGQTYDLVIANGRVLDPASNLDAVRHIGIRGGKIAAVSTTPLGGRATIDATGLVVAPGFIDLHSHG
QTPENYRFKARDGVTTALELEVGANPVAAWYAEREGRALINFGATSGELPARIAVMHDTGKLLPRDKAVERAATAEEFTN
VLTRVGRGIDEGALGIGMGIAYLPHETRAEVLELFRLAAQRKVPVYIHMRNGGPLEPGVIDALQEVIADAAASGASVHVV
HITSMGLREAPLCLAMIQGARARGLDITTEAYPYTAGMTDLGSAIFDEGWQQRQGGIGFGDLQWAATGERLTAESFAKYR
QQGGFVAIHSIPENIVQLAMANPLVMIASDGILEEGKGHPRAAGTYARVLGRYVRELKSLTLMEAVRKMTQMPADRLGMP
AKGRIANGVDADLTIFDAAHVTDRATFESPARYSEGIPYVIVGGTVVVNRGELVPNVTPGHAVRR
>Mature_465_residues
MIRAALLVLMALPMYGQTYDLVIANGRVLDPASNLDAVRHIGIRGGKIAAVSTTPLGGRATIDATGLVVAPGFIDLHSHG
QTPENYRFKARDGVTTALELEVGANPVAAWYAEREGRALINFGATSGELPARIAVMHDTGKLLPRDKAVERAATAEEFTN
VLTRVGRGIDEGALGIGMGIAYLPHETRAEVLELFRLAAQRKVPVYIHMRNGGPLEPGVIDALQEVIADAAASGASVHVV
HITSMGLREAPLCLAMIQGARARGLDITTEAYPYTAGMTDLGSAIFDEGWQQRQGGIGFGDLQWAATGERLTAESFAKYR
QQGGFVAIHSIPENIVQLAMANPLVMIASDGILEEGKGHPRAAGTYARVLGRYVRELKSLTLMEAVRKMTQMPADRLGMP
AKGRIANGVDADLTIFDAAHVTDRATFESPARYSEGIPYVIVGGTVVVNRGELVPNVTPGHAVRR

Specific function: Involved In The Anaerobic Utilization Of Allantoin. [C]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

Organism=Escherichia coli, GI1786722, Length=285, Percent_Identity=28.0701754385965, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR023100
- InterPro:   IPR012855
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3; PF07908 D-aminoacyl_C [H]

EC number: =3.5.1.82 [H]

Molecular weight: Translated: 49595; Mature: 49595

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRAALLVLMALPMYGQTYDLVIANGRVLDPASNLDAVRHIGIRGGKIAAVSTTPLGGRA
CHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCCE
TIDATGLVVAPGFIDLHSHGQTPENYRFKARDGVTTALELEVGANPVAAWYAEREGRALI
EEECCCEEEECCEEEECCCCCCCCCCEEEECCCCEEEEEEEECCCCCEEEEECCCCCEEE
NFGATSGELPARIAVMHDTGKLLPRDKAVERAATAEEFTNVLTRVGRGIDEGALGIGMGI
EECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCE
AYLPHETRAEVLELFRLAAQRKVPVYIHMRNGGPLEPGVIDALQEVIADAAASGASVHVV
EECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
HITSMGLREAPLCLAMIQGARARGLDITTEAYPYTAGMTDLGSAIFDEGWQQRQGGIGFG
EEECCCCCCCCHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCC
DLQWAATGERLTAESFAKYRQQGGFVAIHSIPENIVQLAMANPLVMIASDGILEEGKGHP
CEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCC
RAAGTYARVLGRYVRELKSLTLMEAVRKMTQMPADRLGMPAKGRIANGVDADLTIFDAAH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEECHH
VTDRATFESPARYSEGIPYVIVGGTVVVNRGELVPNVTPGHAVRR
HCCCCCCCCCHHHHCCCCEEEECCEEEEECCCCCCCCCCCHHCCC
>Mature Secondary Structure
MIRAALLVLMALPMYGQTYDLVIANGRVLDPASNLDAVRHIGIRGGKIAAVSTTPLGGRA
CHHHHHHHHHHHCCCCCEEEEEEECCEEECCCCCHHHHHHCCCCCCEEEEEEECCCCCCE
TIDATGLVVAPGFIDLHSHGQTPENYRFKARDGVTTALELEVGANPVAAWYAEREGRALI
EEECCCEEEECCEEEECCCCCCCCCCEEEECCCCEEEEEEEECCCCCEEEEECCCCCEEE
NFGATSGELPARIAVMHDTGKLLPRDKAVERAATAEEFTNVLTRVGRGIDEGALGIGMGI
EECCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCE
AYLPHETRAEVLELFRLAAQRKVPVYIHMRNGGPLEPGVIDALQEVIADAAASGASVHVV
EECCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
HITSMGLREAPLCLAMIQGARARGLDITTEAYPYTAGMTDLGSAIFDEGWQQRQGGIGFG
EEECCCCCCCCHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCC
DLQWAATGERLTAESFAKYRQQGGFVAIHSIPENIVQLAMANPLVMIASDGILEEGKGHP
CEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEEECCCCCCCCCCCC
RAAGTYARVLGRYVRELKSLTLMEAVRKMTQMPADRLGMPAKGRIANGVDADLTIFDAAH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEEECHH
VTDRATFESPARYSEGIPYVIVGGTVVVNRGELVPNVTPGHAVRR
HCCCCCCCCCHHHHCCCCEEEECCEEEEECCCCCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8537313 [H]