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The map label for this gene is araC [C]

Identifier: 116623698

GI number: 116623698

Start: 5829941

End: 5830756

Strand: Reverse

Name: araC [C]

Synonym: Acid_4610

Alternate gene names: 116623698

Gene position: 5830756-5829941 (Counterclockwise)

Preceding gene: 116623699

Following gene: 116623697

Centisome position: 58.51

GC content: 67.4

Gene sequence:

>816_bases
ATGCGGTATCGTCACCGGAGAGCGCGAGGGCCGCTGGCGGATTTGGTGGACGTCCTGTGGTCCTACGAAGGGCCCGCCCA
ACCACACGCGAAGGAGCGTCTCTTGCCCGATGGCTCCATGGAACTCGTCATCAACCTCGCGGATGACGAAGTGCGCGTCT
ACGATCGCCGCGACCACACGCGCTTCGAGCGCCTTCCAGGCGGCGTGCTCATCGGCCCTCACTCCGACTTCTTCGTAATT
GATACCGCCGAGCAGCAGCGCGTCGCCGGCGTTCACTTCCACCCGGGTGGCGCATATCCCTTCCTGCCTCTGCCCGCCGG
AGAACTCCACGGCCTGCACGTCTCGCTCGCCGACGTGTGGGGTCCGCTCGCCGGGGAGCTTCGCGAGCGCCTGATCTCCG
CCCCGTCGATGGACGCCCGCTTCGATGTCCTGGAATCAGCCCTGCTTCGCCGCCTGGCGCAGGCCCGCGCAGGACATCCC
GCGGTGGAGTTCGCGCTCCGCGAGCTTCACGTTTCGCCGCGCCGCAAAATCGCCGACGTCCGCGACCGGACCGGCGTGAG
CGAGCGCCGCTTCATCGAGCTCTTTCGCCGCCAGGTGGGACTGGCGCCCAAACTCTATTCGCGCGTGCGCCGTTTTCAAG
CGGCACTCCGCCGCATTCCCGCGGGCACTGGCGTGAATTGGGCGGATGTCGCGCTCGCCTGCGGCTACGCCGACCAGGCC
CACCTGATCCACGAATTCCGCTCCATCTCGGGCCTGAGCCCGGGTGAATATGCGGGCCTGCGCACGCAGCACCTCAATCA
CGTCCCCATTCAGTGA

Upstream 100 bases:

>100_bases
AGCCGCAAACCCGCAAAGCCGCAAACCCGCAAACCCGCAAAGCGACGCCAAGAGAACTCTTGCCTCGCCCTTCACTTTCC
GAAAATTGTATCTTTGAAAG

Downstream 100 bases:

>100_bases
GGGTCAGTTTCCTACAATACCCGCGCCCCGCGTCGGGAGGAGAATCTCAGACATGAGCAATCTCAAAGTTGTCCCAGAGG
GATATCACACCGTCACTCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Regulatory Protein; Helix-Turn-Helix AraC Domain Protein; AraC Family Transcription Regulator; Transcriptional Regulator Arac Family; AraC Family Protein Transcriptional Regulator; ArsR Family Transcriptional Regulator; AraC/XylS Family Transcriptional Regulator; Arac/Xyls Family Transcriptional Regulator; Transcription Regulator Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Arabinose Operon Regulatory Protein; Fis Family Transcriptional Regulator

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MRYRHRRARGPLADLVDVLWSYEGPAQPHAKERLLPDGSMELVINLADDEVRVYDRRDHTRFERLPGGVLIGPHSDFFVI
DTAEQQRVAGVHFHPGGAYPFLPLPAGELHGLHVSLADVWGPLAGELRERLISAPSMDARFDVLESALLRRLAQARAGHP
AVEFALRELHVSPRRKIADVRDRTGVSERRFIELFRRQVGLAPKLYSRVRRFQAALRRIPAGTGVNWADVALACGYADQA
HLIHEFRSISGLSPGEYAGLRTQHLNHVPIQ

Sequences:

>Translated_271_residues
MRYRHRRARGPLADLVDVLWSYEGPAQPHAKERLLPDGSMELVINLADDEVRVYDRRDHTRFERLPGGVLIGPHSDFFVI
DTAEQQRVAGVHFHPGGAYPFLPLPAGELHGLHVSLADVWGPLAGELRERLISAPSMDARFDVLESALLRRLAQARAGHP
AVEFALRELHVSPRRKIADVRDRTGVSERRFIELFRRQVGLAPKLYSRVRRFQAALRRIPAGTGVNWADVALACGYADQA
HLIHEFRSISGLSPGEYAGLRTQHLNHVPIQ
>Mature_271_residues
MRYRHRRARGPLADLVDVLWSYEGPAQPHAKERLLPDGSMELVINLADDEVRVYDRRDHTRFERLPGGVLIGPHSDFFVI
DTAEQQRVAGVHFHPGGAYPFLPLPAGELHGLHVSLADVWGPLAGELRERLISAPSMDARFDVLESALLRRLAQARAGHP
AVEFALRELHVSPRRKIADVRDRTGVSERRFIELFRRQVGLAPKLYSRVRRFQAALRRIPAGTGVNWADVALACGYADQA
HLIHEFRSISGLSPGEYAGLRTQHLNHVPIQ

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30460; Mature: 30460

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYRHRRARGPLADLVDVLWSYEGPAQPHAKERLLPDGSMELVINLADDEVRVYDRRDHT
CCCCCHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEEECCCCEEEECCCCHH
RFERLPGGVLIGPHSDFFVIDTAEQQRVAGVHFHPGGAYPFLPLPAGELHGLHVSLADVW
HHHHCCCCEEECCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCCCCCCCEEEEHHHHH
GPLAGELRERLISAPSMDARFDVLESALLRRLAQARAGHPAVEFALRELHVSPRRKIADV
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
RDRTGVSERRFIELFRRQVGLAPKLYSRVRRFQAALRRIPAGTGVNWADVALACGYADQA
HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHH
HLIHEFRSISGLSPGEYAGLRTQHLNHVPIQ
HHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC
>Mature Secondary Structure
MRYRHRRARGPLADLVDVLWSYEGPAQPHAKERLLPDGSMELVINLADDEVRVYDRRDHT
CCCCCHHHCCCHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEEECCCCEEEECCCCHH
RFERLPGGVLIGPHSDFFVIDTAEQQRVAGVHFHPGGAYPFLPLPAGELHGLHVSLADVW
HHHHCCCCEEECCCCCEEEEECCCCHHHCCEEECCCCCCCCCCCCCCCCCCEEEEHHHHH
GPLAGELRERLISAPSMDARFDVLESALLRRLAQARAGHPAVEFALRELHVSPRRKIADV
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHH
RDRTGVSERRFIELFRRQVGLAPKLYSRVRRFQAALRRIPAGTGVNWADVALACGYADQA
HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHH
HLIHEFRSISGLSPGEYAGLRTQHLNHVPIQ
HHHHHHHHHCCCCCCCCCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA