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The map label for this gene is ydfF [H]

Identifier: 116623662

GI number: 116623662

Start: 5787736

End: 5788395

Strand: Reverse

Name: ydfF [H]

Synonym: Acid_4574

Alternate gene names: 116623662

Gene position: 5788395-5787736 (Counterclockwise)

Preceding gene: 116623667

Following gene: 116623661

Centisome position: 58.08

GC content: 64.85

Gene sequence:

>660_bases
ATGAAAGTAGCCCGGATCGCGCAGGCAATCGGCGAGCCCGCACGCGCCCGCATGCTTTACTGCCTGTTGGATGGCCATGC
TCGCACCGCTACCGAACTGGCGATCGTGGGCGGCGTGAGTGCCTCCACCGCGAGCGTCCATCTCGATCGCCTGAAGACCG
AACATCTGGTGAACGCAGTCGTGCAGGGCAAGCACCGCTACTTCAGCCTGCAAGGCGCCGACGTAGCGGCCGCGCTCGAA
AGCTTGAGCGTGCTCGCGGGCAGTCCGCGAGGCCAGTTCGCGCCGAATACGCCGAACCGGCTCCGCGCTGCGCGCACCTG
CTACGATCACATCGCCGGCACACTGGGCGTCTCCCTCCACGATCGCATTCACGCGCTCGGCTGGCTCTCCGCCGATTACA
TGACGACACCGAAGGGAGCCAGGGCATTCGCGGATCTCGGCATCGATCTTGATGCAGCCATGTCGCTGCGCCGCCGCTTC
GCCTACGCGTGTCTCGATTGGAGCGAACGGCGGCCGCACATCGCCGGAGCCCTGGGCGCCGCACTCCTTAATATGGCGCT
CAAACGGCGATGGATCGCACAGGATCTTGACAGCCGCGCCCTGGGAGTAACTCCTTCCGGTCGCCGTGAACTGTTGAAAC
GATTCGGTCTTACGGCCTGA

Upstream 100 bases:

>100_bases
CCCGCTGAAAGGGGTCGATCTGGTAGCGGATGATACAGGCGATCGTCATTCCCACAGCTTGCCCGTTCTCGCGCAGCTAC
GCTTCGTTTATCATCAAAGT

Downstream 100 bases:

>100_bases
TTCCCTATCCGAAAAATCCCCATTGACAGCGATAGCAATCTGCAATATAGTAATCACAGATTGCGATATGACACTCGGTG
AAAAGCTTCGGTACCTGCGG

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MKVARIAQAIGEPARARMLYCLLDGHARTATELAIVGGVSASTASVHLDRLKTEHLVNAVVQGKHRYFSLQGADVAAALE
SLSVLAGSPRGQFAPNTPNRLRAARTCYDHIAGTLGVSLHDRIHALGWLSADYMTTPKGARAFADLGIDLDAAMSLRRRF
AYACLDWSERRPHIAGALGAALLNMALKRRWIAQDLDSRALGVTPSGRRELLKRFGLTA

Sequences:

>Translated_219_residues
MKVARIAQAIGEPARARMLYCLLDGHARTATELAIVGGVSASTASVHLDRLKTEHLVNAVVQGKHRYFSLQGADVAAALE
SLSVLAGSPRGQFAPNTPNRLRAARTCYDHIAGTLGVSLHDRIHALGWLSADYMTTPKGARAFADLGIDLDAAMSLRRRF
AYACLDWSERRPHIAGALGAALLNMALKRRWIAQDLDSRALGVTPSGRRELLKRFGLTA
>Mature_219_residues
MKVARIAQAIGEPARARMLYCLLDGHARTATELAIVGGVSASTASVHLDRLKTEHLVNAVVQGKHRYFSLQGADVAAALE
SLSVLAGSPRGQFAPNTPNRLRAARTCYDHIAGTLGVSLHDRIHALGWLSADYMTTPKGARAFADLGIDLDAAMSLRRRF
AYACLDWSERRPHIAGALGAALLNMALKRRWIAQDLDSRALGVTPSGRRELLKRFGLTA

Specific function: Unknown

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 23664; Mature: 23664

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVARIAQAIGEPARARMLYCLLDGHARTATELAIVGGVSASTASVHLDRLKTEHLVNAV
CCHHHHHHHHCCCHHHHEEEEEECCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHH
VQGKHRYFSLQGADVAAALESLSVLAGSPRGQFAPNTPNRLRAARTCYDHIAGTLGVSLH
HHCCHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
DRIHALGWLSADYMTTPKGARAFADLGIDLDAAMSLRRRFAYACLDWSERRPHIAGALGA
HHHHHHHHCCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHH
ALLNMALKRRWIAQDLDSRALGVTPSGRRELLKRFGLTA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKVARIAQAIGEPARARMLYCLLDGHARTATELAIVGGVSASTASVHLDRLKTEHLVNAV
CCHHHHHHHHCCCHHHHEEEEEECCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHH
VQGKHRYFSLQGADVAAALESLSVLAGSPRGQFAPNTPNRLRAARTCYDHIAGTLGVSLH
HHCCHHEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHH
DRIHALGWLSADYMTTPKGARAFADLGIDLDAAMSLRRRFAYACLDWSERRPHIAGALGA
HHHHHHHHCCCCCEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHH
ALLNMALKRRWIAQDLDSRALGVTPSGRRELLKRFGLTA
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]