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The map label for this gene is yrrB [H]

Identifier: 116623643

GI number: 116623643

Start: 5756376

End: 5758022

Strand: Direct

Name: yrrB [H]

Synonym: Acid_4555

Alternate gene names: 116623643

Gene position: 5756376-5758022 (Clockwise)

Preceding gene: 116623642

Following gene: 116623652

Centisome position: 57.76

GC content: 64.42

Gene sequence:

>1647_bases
ATGGAATACGTAGCTGGAATCGAAAATGGGGTCTCCATGCCTCCGGGCGTGACCCCGATTAACGACCTCAAGAACCAGAA
ACGCGCCAACAAGACCCTGTCCAAGGCCGTTTCCCTGCACCTTGAAGGCAAGCTCGAAAGCGCCGCGCGCCTGCTCACCA
AGGCCATCGAAGATGGCGAACGGGAGCCCTCGCTCTATTCCGCCCTCGGCCACATTCAGTACGAAATGCGCGACTACGAA
GCCGCTGGGCGCACCTACTCGCAGCTCTCCGAGATCGATTCCCAGCACCGCACCGCGCACTTCAACCGCGGTGTCTGCCT
CGGCAATCTCAAGGAATGGAAGGATGCCGCCGACGCCTTCCGCCGCGCCTTCGAAGCCGACGCCTCGCGCAGCGACGCCA
TGCTCGGACTCGGCATCGCGTTGATCCACGACGGCCACCCCGGCGACGCGCTCATGCCGCTCGAGAAATATCTCAGCCTG
TTCCCCAATCATGAGCAGGCGCTATTCGGCCAGGCCGTCGCCCTCCAGCAGACCGGCAGGCACGCCGAAAGCGTGGAACA
GTATCGCAAGGTGCTGTCGCGCAATCCGAAATGCGAAGAGGCGCTCTCTAACCTCGTCGCCATGTTCATCGAGAAGAAGG
ACCACGAAAGCGTCCGCCGCTACGCGGAGATGCTCTGCGAATTGCAGCCCGATTCGCCGGTCGCTACCGAAGCCCTGGCC
ACACTCGCGTTCCAGGATGGCGACTACCTCTCCGCCGCCCGCCACTGCCGGACCCTCTGCGAATCCGCACCCGACCGTTT
CGAAAACTGGTTCAACCTTGGGGTTGCCCACCACAAAATGGGCAACTACGACAAGGCCGCCCAGGCATACCGGCAGGCCG
CCAGCCTGCAGCCCTCCAGCGCCCAGTCCCATCTCAATCTCGGCGTCGCGCAGCAGGAGCTAAACGACTTGGCCGGGGCC
CGCGCCAGCTACGAGCACGCCCTCAACATCGATCCGAACCAGTCCGGCGTCCTGTGGAATCTCGCGCTCGTGCTGGAACA
GCAGGGCGAGCGGCAGTGGGCCGAAAAGCTCTATGCGCGCATCAACGAGGATGCGCCGGAATGGGGCGACGCCTGCTTCC
GCCTGGGCTATCTCAGGCTGCTGCGCGGCGATTACATCAATAGCGCCGAGGCGTTCGAGGCCTGCCTGGCGCATCGTTTG
GACTGGCCCGAAGCGCATCTCAACGCCGGCATCGCCTACGCGCGCAACGGGAACGCGCCCGCCGCCCGCAAGAGCTTCCA
GGAAGTGCTCACGCTCCGCCCCGATTCCTCCGACGCCGTCCGCGGCCTGGCCGCCCTCGCGCTCGAACAGGAAGAGTTCA
CCGAAGCCTACGACCTCCACCGCCGCCTCATCGAACTCGGGGAGCACAGCCCCGAGCTCTTCTACAACGCCGGTCTGATC
TGCCAGAAACAGGGCCAGACCCAGGACGCCGTCGGGTTTTACCAGCAGGCACTTAACGAAGATCCGCAGTTCGCCGAAGC
CCTGCTCAATCTCGGGCACGCCCTGATGTCCATGGGCCAGGAAGAGGAAGCCCGCAGCTACTGGCGGCGCGCCATCCGCG
AAAAACCCGAGCTCGCCCAGACGTACTTCGAGCCGCCGACGGCGTAG

Upstream 100 bases:

>100_bases
CCGACGATGGCAATACCACCTTTGCGGCCGTCTGGGCCGGTCTGCCTTACCTCCGTGCCGCCCAAAAGGCACGAGCTTCC
CACACTCGGAGAACTCACCA

Downstream 100 bases:

>100_bases
ATGCCGTAACTCCCGCGTTCTCAAGATTTCCAACCGCTTGCTGACGGGTCTGTGAAAACATCCCGATCCGCAGCGAACTT
CGCTCGACTGCGCGTTTCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MEYVAGIENGVSMPPGVTPINDLKNQKRANKTLSKAVSLHLEGKLESAARLLTKAIEDGEREPSLYSALGHIQYEMRDYE
AAGRTYSQLSEIDSQHRTAHFNRGVCLGNLKEWKDAADAFRRAFEADASRSDAMLGLGIALIHDGHPGDALMPLEKYLSL
FPNHEQALFGQAVALQQTGRHAESVEQYRKVLSRNPKCEEALSNLVAMFIEKKDHESVRRYAEMLCELQPDSPVATEALA
TLAFQDGDYLSAARHCRTLCESAPDRFENWFNLGVAHHKMGNYDKAAQAYRQAASLQPSSAQSHLNLGVAQQELNDLAGA
RASYEHALNIDPNQSGVLWNLALVLEQQGERQWAEKLYARINEDAPEWGDACFRLGYLRLLRGDYINSAEAFEACLAHRL
DWPEAHLNAGIAYARNGNAPAARKSFQEVLTLRPDSSDAVRGLAALALEQEEFTEAYDLHRRLIELGEHSPELFYNAGLI
CQKQGQTQDAVGFYQQALNEDPQFAEALLNLGHALMSMGQEEEARSYWRRAIREKPELAQTYFEPPTA

Sequences:

>Translated_548_residues
MEYVAGIENGVSMPPGVTPINDLKNQKRANKTLSKAVSLHLEGKLESAARLLTKAIEDGEREPSLYSALGHIQYEMRDYE
AAGRTYSQLSEIDSQHRTAHFNRGVCLGNLKEWKDAADAFRRAFEADASRSDAMLGLGIALIHDGHPGDALMPLEKYLSL
FPNHEQALFGQAVALQQTGRHAESVEQYRKVLSRNPKCEEALSNLVAMFIEKKDHESVRRYAEMLCELQPDSPVATEALA
TLAFQDGDYLSAARHCRTLCESAPDRFENWFNLGVAHHKMGNYDKAAQAYRQAASLQPSSAQSHLNLGVAQQELNDLAGA
RASYEHALNIDPNQSGVLWNLALVLEQQGERQWAEKLYARINEDAPEWGDACFRLGYLRLLRGDYINSAEAFEACLAHRL
DWPEAHLNAGIAYARNGNAPAARKSFQEVLTLRPDSSDAVRGLAALALEQEEFTEAYDLHRRLIELGEHSPELFYNAGLI
CQKQGQTQDAVGFYQQALNEDPQFAEALLNLGHALMSMGQEEEARSYWRRAIREKPELAQTYFEPPTA
>Mature_548_residues
MEYVAGIENGVSMPPGVTPINDLKNQKRANKTLSKAVSLHLEGKLESAARLLTKAIEDGEREPSLYSALGHIQYEMRDYE
AAGRTYSQLSEIDSQHRTAHFNRGVCLGNLKEWKDAADAFRRAFEADASRSDAMLGLGIALIHDGHPGDALMPLEKYLSL
FPNHEQALFGQAVALQQTGRHAESVEQYRKVLSRNPKCEEALSNLVAMFIEKKDHESVRRYAEMLCELQPDSPVATEALA
TLAFQDGDYLSAARHCRTLCESAPDRFENWFNLGVAHHKMGNYDKAAQAYRQAASLQPSSAQSHLNLGVAQQELNDLAGA
RASYEHALNIDPNQSGVLWNLALVLEQQGERQWAEKLYARINEDAPEWGDACFRLGYLRLLRGDYINSAEAFEACLAHRL
DWPEAHLNAGIAYARNGNAPAARKSFQEVLTLRPDSSDAVRGLAALALEQEEFTEAYDLHRRLIELGEHSPELFYNAGLI
CQKQGQTQDAVGFYQQALNEDPQFAEALLNLGHALMSMGQEEEARSYWRRAIREKPELAQTYFEPPTA

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI32307148, Length=369, Percent_Identity=26.5582655826558, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI32307150, Length=369, Percent_Identity=26.5582655826558, Blast_Score=110, Evalue=4e-24,
Organism=Homo sapiens, GI301336134, Length=381, Percent_Identity=22.8346456692913, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI83415184, Length=381, Percent_Identity=22.8346456692913, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI25952122, Length=320, Percent_Identity=21.875, Blast_Score=70, Evalue=7e-12,
Organism=Homo sapiens, GI224809432, Length=283, Percent_Identity=23.6749116607774, Blast_Score=70, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115532692, Length=369, Percent_Identity=25.2032520325203, Blast_Score=102, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI115532690, Length=369, Percent_Identity=25.2032520325203, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI17647755, Length=371, Percent_Identity=25.3369272237197, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24585827, Length=371, Percent_Identity=25.3369272237197, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24585829, Length=371, Percent_Identity=25.3369272237197, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI24656717, Length=270, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI18110006, Length=270, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 61214; Mature: 61214

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYVAGIENGVSMPPGVTPINDLKNQKRANKTLSKAVSLHLEGKLESAARLLTKAIEDGE
CCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
REPSLYSALGHIQYEMRDYEAAGRTYSQLSEIDSQHRTAHFNRGVCLGNLKEWKDAADAF
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHH
RRAFEADASRSDAMLGLGIALIHDGHPGDALMPLEKYLSLFPNHEQALFGQAVALQQTGR
HHHHHHCCCCCCHHHHHCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
HAESVEQYRKVLSRNPKCEEALSNLVAMFIEKKDHESVRRYAEMLCELQPDSPVATEALA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
TLAFQDGDYLSAARHCRTLCESAPDRFENWFNLGVAHHKMGNYDKAAQAYRQAASLQPSS
HHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
AQSHLNLGVAQQELNDLAGARASYEHALNIDPNQSGVLWNLALVLEQQGERQWAEKLYAR
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
INEDAPEWGDACFRLGYLRLLRGDYINSAEAFEACLAHRLDWPEAHLNAGIAYARNGNAP
HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCEEEECCCCCC
AARKSFQEVLTLRPDSSDAVRGLAALALEQEEFTEAYDLHRRLIELGEHSPELFYNAGLI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCE
CQKQGQTQDAVGFYQQALNEDPQFAEALLNLGHALMSMGQEEEARSYWRRAIREKPELAQ
ECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHH
TYFEPPTA
HHCCCCCC
>Mature Secondary Structure
MEYVAGIENGVSMPPGVTPINDLKNQKRANKTLSKAVSLHLEGKLESAARLLTKAIEDGE
CCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
REPSLYSALGHIQYEMRDYEAAGRTYSQLSEIDSQHRTAHFNRGVCLGNLKEWKDAADAF
CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHH
RRAFEADASRSDAMLGLGIALIHDGHPGDALMPLEKYLSLFPNHEQALFGQAVALQQTGR
HHHHHHCCCCCCHHHHHCEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
HAESVEQYRKVLSRNPKCEEALSNLVAMFIEKKDHESVRRYAEMLCELQPDSPVATEALA
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
TLAFQDGDYLSAARHCRTLCESAPDRFENWFNLGVAHHKMGNYDKAAQAYRQAASLQPSS
HHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
AQSHLNLGVAQQELNDLAGARASYEHALNIDPNQSGVLWNLALVLEQQGERQWAEKLYAR
CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
INEDAPEWGDACFRLGYLRLLRGDYINSAEAFEACLAHRLDWPEAHLNAGIAYARNGNAP
HCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHCCCEEEECCCCCC
AARKSFQEVLTLRPDSSDAVRGLAALALEQEEFTEAYDLHRRLIELGEHSPELFYNAGLI
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCE
CQKQGQTQDAVGFYQQALNEDPQFAEALLNLGHALMSMGQEEEARSYWRRAIREKPELAQ
ECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHH
TYFEPPTA
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]