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The map label for this gene is 116623584

Identifier: 116623584

GI number: 116623584

Start: 5692319

End: 5692879

Strand: Reverse

Name: 116623584

Synonym: Acid_4494

Alternate gene names: NA

Gene position: 5692879-5692319 (Counterclockwise)

Preceding gene: 116623587

Following gene: 116623583

Centisome position: 57.13

GC content: 60.78

Gene sequence:

>561_bases
ATGCCCGCCCGGGCACGCGAGGATATCACGGAGCTTCTCAATGCTTGGGGGGAAGGCGATCAGGACGCGTTGAACCGTCT
CATGCCTCTTGTTTATCAGGAGTTGCGGCGCATCGCACGGAAACACCTGACGGGCCAATCGCCGGGGCACACCCTTGAGT
CGGCCGCCCTGGTGAATGAGGCGTACTTGAAGCTGATAAAGGCGGATGTTCGCTTTGAAGGCCGGCTGCAATTCTTTGCG
CTGTGCGCGCAAGTGATCCGGCGCATTGTGGTGGACCACGCGCGCAACAGGCTCTACGCAAAGCGCGGCGGCAAAGCAGT
GCACGTCCCGATTGATGAGGGAATCGTTGGGGCGCCGGCGAAGGATGTCGATGTGCTGGCCCTCGATGCCGCTTTGGCTT
CCTTATCTAATGTTGACCCGCGCAAAGCCCGGGTTGTGGAACTGCGCTACTTCGGTGGGTTGAGCGTTGAGGAAACAGCC
GAGGCCCTGCGAATTTCGCCGGAGACGGCGAAACGCGACTGGAAAATGGCCAAAGCGTGGCTGCTCCGGGAGCTTGCCTG
A

Upstream 100 bases:

>100_bases
ACCTCCATGCGCCACACTCAGGTGGTCGGCATTAAGAACGGGAAGTATCGTCGAAAAGGGTCATCGATGGAGAAGAAATC
TTCGTGATAGACTGTGGCCC

Downstream 100 bases:

>100_bases
AAACTCTCCCATCCCTTCGCGCTGAATCCCGGGAACCCCGTTCACACGAACTTGAAATTTATATTTCCCCTGATTTCAAT
AGATTGGGGTTTTCACCCCC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma Factor ECF-Like Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor; ECF Sigma Factor Family Protein; Sigma Factor; RNA Polymerase ECF-Type Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit; Extracytoplasmic Sigma Factor ECF; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-E Factor; ECF Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MPARAREDITELLNAWGEGDQDALNRLMPLVYQELRRIARKHLTGQSPGHTLESAALVNEAYLKLIKADVRFEGRLQFFA
LCAQVIRRIVVDHARNRLYAKRGGKAVHVPIDEGIVGAPAKDVDVLALDAALASLSNVDPRKARVVELRYFGGLSVEETA
EALRISPETAKRDWKMAKAWLLRELA

Sequences:

>Translated_186_residues
MPARAREDITELLNAWGEGDQDALNRLMPLVYQELRRIARKHLTGQSPGHTLESAALVNEAYLKLIKADVRFEGRLQFFA
LCAQVIRRIVVDHARNRLYAKRGGKAVHVPIDEGIVGAPAKDVDVLALDAALASLSNVDPRKARVVELRYFGGLSVEETA
EALRISPETAKRDWKMAKAWLLRELA
>Mature_185_residues
PARAREDITELLNAWGEGDQDALNRLMPLVYQELRRIARKHLTGQSPGHTLESAALVNEAYLKLIKADVRFEGRLQFFAL
CAQVIRRIVVDHARNRLYAKRGGKAVHVPIDEGIVGAPAKDVDVLALDAALASLSNVDPRKARVVELRYFGGLSVEETAE
ALRISPETAKRDWKMAKAWLLRELA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20760; Mature: 20629

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARAREDITELLNAWGEGDQDALNRLMPLVYQELRRIARKHLTGQSPGHTLESAALVNE
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AYLKLIKADVRFEGRLQFFALCAQVIRRIVVDHARNRLYAKRGGKAVHVPIDEGIVGAPA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
KDVDVLALDAALASLSNVDPRKARVVELRYFGGLSVEETAEALRISPETAKRDWKMAKAW
CCHHHHHHHHHHHHHCCCCCCHHHEEEEHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LLRELA
HHHHCC
>Mature Secondary Structure 
PARAREDITELLNAWGEGDQDALNRLMPLVYQELRRIARKHLTGQSPGHTLESAALVNE
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
AYLKLIKADVRFEGRLQFFALCAQVIRRIVVDHARNRLYAKRGGKAVHVPIDEGIVGAPA
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
KDVDVLALDAALASLSNVDPRKARVVELRYFGGLSVEETAEALRISPETAKRDWKMAKAW
CCHHHHHHHHHHHHHCCCCCCHHHEEEEHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
LLRELA
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA