| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
Click here to switch to the map view.
The map label for this gene is ykvO [H]
Identifier: 116623569
GI number: 116623569
Start: 5671078
End: 5671812
Strand: Reverse
Name: ykvO [H]
Synonym: Acid_4479
Alternate gene names: 116623569
Gene position: 5671812-5671078 (Counterclockwise)
Preceding gene: 116623575
Following gene: 116623568
Centisome position: 56.91
GC content: 66.39
Gene sequence:
>735_bases ATGGGAAAGCTTGAAGGAAAAGTTGCGGTCATCACCGGTGGCGCTACCGGCATCGGCCGCGCCGCAGCAAAGCGCTTCAT CGAAGAGGGCGCCATCGTCTTCCTCTTCGGACGCCGCCAGGTAGAGCTCGACGCCGCTGTGGCCGAGCTCGGGCCTAATG CCCGCGCGGTGAAGGGCTCGGTCGCCGATCTGGCCGACCTTGACCGACTCTACGCGGCGGTGAAGGCCGAGCGCGAAACC CTCGACATCGTCTTCGCAAATGCGGGGGCGGGCAGCCCGATTACGCTCGGCAAGATCACCGCCGAGCACATTGACGAGAC CTTCGACACCAATGTGAAGGGTACGATCTTCACGGTCCAGAAGGCGCTGCCGCTGATGGGCAGGGGCGGTTCGATTATTC TGACCGGCTCGAGCGCCGGCACCACGGGCGCTCCGACAATGAGCGTCTACAGCGCGAGCAAGGCGGCAGTGCGTAACCTC GCGCGGACCTGGGCGGAGGACCTGAAGGGCACGGGCATCCGGGTAAACGTGCTGTCGCCCGGGCCGACCGCGACCGAACT CGCGAAGGCGGCGCTAGGCGAGGAGGGCCAGAGAGTCTACGCCGCGATGACTCCGCTCCAGCGCATGGCCGATCCGGCGG AGATCGGGGCGGCTGCTGCCTTTCTGGCGTCGGACGACAGCAGCTTCATGACCGCCAGCGAGCTCGCCGTCGATGGCGGT CTGGCGCAAATCTGA
Upstream 100 bases:
>100_bases TTTTAGACGAATAGACAACAATCTTGGACTTTTTGGCAGTTCTCGTCCATCGCTAAAGAACTCTACTCTAGTGTACCGAG ATCTACCGGAGGGAGTACTT
Downstream 100 bases:
>100_bases CCCACTCACCCAACGGCGCTCCATTCGATGATTCGAAGCGCCGTAGATTTCAGTAAACCGAAGGAGAACATATGAGCTAC GCAATTGTAGGATTCGGCAA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MGKLEGKVAVITGGATGIGRAAAKRFIEEGAIVFLFGRRQVELDAAVAELGPNARAVKGSVADLADLDRLYAAVKAERET LDIVFANAGAGSPITLGKITAEHIDETFDTNVKGTIFTVQKALPLMGRGGSIILTGSSAGTTGAPTMSVYSASKAAVRNL ARTWAEDLKGTGIRVNVLSPGPTATELAKAALGEEGQRVYAAMTPLQRMADPAEIGAAAAFLASDDSSFMTASELAVDGG LAQI
Sequences:
>Translated_244_residues MGKLEGKVAVITGGATGIGRAAAKRFIEEGAIVFLFGRRQVELDAAVAELGPNARAVKGSVADLADLDRLYAAVKAERET LDIVFANAGAGSPITLGKITAEHIDETFDTNVKGTIFTVQKALPLMGRGGSIILTGSSAGTTGAPTMSVYSASKAAVRNL ARTWAEDLKGTGIRVNVLSPGPTATELAKAALGEEGQRVYAAMTPLQRMADPAEIGAAAAFLASDDSSFMTASELAVDGG LAQI >Mature_243_residues GKLEGKVAVITGGATGIGRAAAKRFIEEGAIVFLFGRRQVELDAAVAELGPNARAVKGSVADLADLDRLYAAVKAERETL DIVFANAGAGSPITLGKITAEHIDETFDTNVKGTIFTVQKALPLMGRGGSIILTGSSAGTTGAPTMSVYSASKAAVRNLA RTWAEDLKGTGIRVNVLSPGPTATELAKAALGEEGQRVYAAMTPLQRMADPAEIGAAAAFLASDDSSFMTASELAVDGGL AQI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=32.2448979591837, Blast_Score=115, Evalue=2e-26, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=32.9268292682927, Blast_Score=110, Evalue=9e-25, Organism=Homo sapiens, GI19923817, Length=259, Percent_Identity=30.1158301158301, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=31.25, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=29.9595141700405, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=34.8717948717949, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=31.0077519379845, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=35.1648351648352, Blast_Score=85, Evalue=4e-17, Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=28.5123966942149, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=31.2, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI59889578, Length=225, Percent_Identity=32.8888888888889, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4758504, Length=253, Percent_Identity=30.0395256916996, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI210032110, Length=183, Percent_Identity=31.6939890710383, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=250, Percent_Identity=28.8, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=27.6041666666667, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=31.7535545023697, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI223718074, Length=196, Percent_Identity=31.6326530612245, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI31542939, Length=244, Percent_Identity=28.2786885245902, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=34.3873517786561, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI1789378, Length=247, Percent_Identity=34.0080971659919, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=31.4285714285714, Blast_Score=110, Evalue=9e-26, Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=34.6774193548387, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=32.258064516129, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI2367365, Length=242, Percent_Identity=32.6446280991736, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1787820, Length=212, Percent_Identity=33.0188679245283, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=32.1285140562249, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1789208, Length=245, Percent_Identity=29.7959183673469, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=28.9795918367347, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI87082160, Length=243, Percent_Identity=28.3950617283951, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1787526, Length=233, Percent_Identity=27.4678111587983, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788891, Length=263, Percent_Identity=31.5589353612167, Blast_Score=63, Evalue=1e-11, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=27.3092369477912, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=33.5820895522388, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=28.8617886178862, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=30.9160305343511, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=27.8884462151394, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=34.3511450381679, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI115534694, Length=245, Percent_Identity=28.9795918367347, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=32.8358208955224, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562910, Length=261, Percent_Identity=30.6513409961686, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=31.1787072243346, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17555706, Length=248, Percent_Identity=28.6290322580645, Blast_Score=88, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=31.0344827586207, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562906, Length=261, Percent_Identity=30.2681992337165, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=30.7116104868914, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17531453, Length=261, Percent_Identity=29.8850574712644, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI71994604, Length=250, Percent_Identity=30.8, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=31.6793893129771, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=31.4176245210728, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538182, Length=252, Percent_Identity=29.7619047619048, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=30.0751879699248, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17544670, Length=261, Percent_Identity=26.0536398467433, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17536025, Length=257, Percent_Identity=29.5719844357977, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=30.078125, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17563726, Length=265, Percent_Identity=31.3207547169811, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=30.188679245283, Blast_Score=78, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565030, Length=260, Percent_Identity=30.3846153846154, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=28.0632411067194, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=29.3436293436293, Blast_Score=74, Evalue=5e-14, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=30.2681992337165, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=28.6852589641434, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17567345, Length=236, Percent_Identity=26.6949152542373, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=25.1282051282051, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=225, Percent_Identity=32.8888888888889, Blast_Score=91, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=26.8, Blast_Score=79, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6322227, Length=216, Percent_Identity=30.0925925925926, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322067, Length=231, Percent_Identity=26.8398268398268, Blast_Score=69, Evalue=5e-13, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=33.7349397590361, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=33.469387755102, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=30.5555555555556, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI23397609, Length=246, Percent_Identity=32.1138211382114, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=30, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24643142, Length=243, Percent_Identity=28.8065843621399, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=29.6875, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI116007236, Length=204, Percent_Identity=26.4705882352941, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=31.4741035856574, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI17737361, Length=253, Percent_Identity=28.4584980237154, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007238, Length=191, Percent_Identity=25.130890052356, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24584748, Length=188, Percent_Identity=27.6595744680851, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI161076933, Length=188, Percent_Identity=27.6595744680851, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24641232, Length=210, Percent_Identity=27.6190476190476, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI116007234, Length=209, Percent_Identity=28.2296650717703, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI28571387, Length=217, Percent_Identity=27.6497695852535, Blast_Score=67, Evalue=7e-12, Organism=Drosophila melanogaster, GI24663911, Length=233, Percent_Identity=25.3218884120172, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584752, Length=194, Percent_Identity=29.3814432989691, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI281364494, Length=237, Percent_Identity=26.1603375527426, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24648944, Length=194, Percent_Identity=28.8659793814433, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI21358495, Length=205, Percent_Identity=28.780487804878, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 24966; Mature: 24835
Theoretical pI: Translated: 5.12; Mature: 5.12
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKLEGKVAVITGGATGIGRAAAKRFIEEGAIVFLFGRRQVELDAAVAELGPNARAVKGS CCCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHCCCCCCEECCC VADLADLDRLYAAVKAERETLDIVFANAGAGSPITLGKITAEHIDETFDTNVKGTIFTVQ HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEE KALPLMGRGGSIILTGSSAGTTGAPTMSVYSASKAAVRNLARTWAEDLKGTGIRVNVLSP HHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC GPTATELAKAALGEEGQRVYAAMTPLQRMADPAEIGAAAAFLASDDSSFMTASELAVDGG CCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHEEEECCCCCCEEHHHHHCCCC LAQI CCCC >Mature Secondary Structure GKLEGKVAVITGGATGIGRAAAKRFIEEGAIVFLFGRRQVELDAAVAELGPNARAVKGS CCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHCCCCCCEECCC VADLADLDRLYAAVKAERETLDIVFANAGAGSPITLGKITAEHIDETFDTNVKGTIFTVQ HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEE KALPLMGRGGSIILTGSSAGTTGAPTMSVYSASKAAVRNLARTWAEDLKGTGIRVNVLSP HHCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC GPTATELAKAALGEEGQRVYAAMTPLQRMADPAEIGAAAAFLASDDSSFMTASELAVDGG CCCHHHHHHHHHCCCCCEEHHHHHHHHHCCCHHHHHHHHEEEECCCCCCEEHHHHHCCCC LAQI CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]