| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is ykvO [H]
Identifier: 116623567
GI number: 116623567
Start: 5669585
End: 5670352
Strand: Reverse
Name: ykvO [H]
Synonym: Acid_4477
Alternate gene names: 116623567
Gene position: 5670352-5669585 (Counterclockwise)
Preceding gene: 116623568
Following gene: 116623566
Centisome position: 56.9
GC content: 59.9
Gene sequence:
>768_bases ATGAACCATAACCATGGACAAAAATTGGCGGGGAAAATTGCGGTGATCACAGGCGGAAGCAGCGGGATTGGCTTGGCCAC CGCCAAGCGCTTCGTTGAAGAAGGCGCGCACGTCGTAATCACTGGCCGACGGGAGAAAGAGCTCAAGGAGGCCGCAGCCT TTATCGGGAGAAATGTCACGACGGTGGCGGGCGACGTATCGCGCTTGGAAGATCTGGACCGGCTCTATGTCGCGGTGAAG GAGAAACATGGTCACATCGACGTTCTCTTCGCGAACGCGGGCGCGGGGACAATCGCACCGCTCGCGGCAGCTACTGAGGC CCATTTTGACCAGACCTTCGACGTGAACGTGAAGGGGCTGTTCTTTACGGTGCAGAAGGCCCTTCCCCTCTTCAAAGATG GCGGCTCGATCATCCTGACCTCTTCCGTCTCGAACGTGTTGGGGCTCCCAGGGTTTAGCGCCTACGCCGCGAGTAAGGCG GCTGTGCGCAACTTCGCGCGCGGGTGGACTCTGGAATTGAAAGACCGCAAGATCCGAGTGAATTGCTTGAGCCCCGGAGC AATCGATACCCCGGCCTTAGCGACGACGACGGGCCTTACCGCTGAACAGGCCGAGCAGGCGGCCGCGCAGTTCACCACGC AAATCCCCATGGGTCGCAGAGGCATGCCGGAGGAAATCGCGGCTGCAGTGGTGTTCCTCGCTTCCGATGAAAGTTCTTAC ATCACCGGTGCGGATCTCGCGGTCGATGGAGGCATGGCGCAGGTTTGA
Upstream 100 bases:
>100_bases AACGTGGGGTCAGCTCATCTTCCAGGATTTGTTTAAGAAGGAACAGTAATCGGTGATTGTGTAAGCTTTGGCCGTAAATT CAACAAAAGGGAGAAAACAA
Downstream 100 bases:
>100_bases CCCCGGCGCGGTGGCTTCTCGAAAGAGCAGTAATCGATCGTCGATCTTGTGATGAGGCCCGAGAAGGATGGTTCCGAGAC GTCTGATTAGATCGGACACG
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MNHNHGQKLAGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIGRNVTTVAGDVSRLEDLDRLYVAVK EKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQKALPLFKDGGSIILTSSVSNVLGLPGFSAYAASKA AVRNFARGWTLELKDRKIRVNCLSPGAIDTPALATTTGLTAEQAEQAAAQFTTQIPMGRRGMPEEIAAAVVFLASDESSY ITGADLAVDGGMAQV
Sequences:
>Translated_255_residues MNHNHGQKLAGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIGRNVTTVAGDVSRLEDLDRLYVAVK EKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQKALPLFKDGGSIILTSSVSNVLGLPGFSAYAASKA AVRNFARGWTLELKDRKIRVNCLSPGAIDTPALATTTGLTAEQAEQAAAQFTTQIPMGRRGMPEEIAAAVVFLASDESSY ITGADLAVDGGMAQV >Mature_255_residues MNHNHGQKLAGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIGRNVTTVAGDVSRLEDLDRLYVAVK EKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGLFFTVQKALPLFKDGGSIILTSSVSNVLGLPGFSAYAASKA AVRNFARGWTLELKDRKIRVNCLSPGAIDTPALATTTGLTAEQAEQAAAQFTTQIPMGRRGMPEEIAAAVVFLASDESSY ITGADLAVDGGMAQV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=35.7429718875502, Blast_Score=150, Evalue=1e-36, Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=32.9365079365079, Blast_Score=131, Evalue=5e-31, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=33.6, Blast_Score=125, Evalue=4e-29, Organism=Homo sapiens, GI19923817, Length=252, Percent_Identity=29.3650793650794, Blast_Score=115, Evalue=5e-26, Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=9e-26, Organism=Homo sapiens, GI126723191, Length=181, Percent_Identity=35.3591160220994, Blast_Score=112, Evalue=4e-25, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=35.2631578947368, Blast_Score=108, Evalue=4e-24, Organism=Homo sapiens, GI40254992, Length=243, Percent_Identity=30.8641975308642, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI15277342, Length=259, Percent_Identity=32.8185328185328, Blast_Score=98, Evalue=8e-21, Organism=Homo sapiens, GI10190704, Length=257, Percent_Identity=34.2412451361868, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI59889578, Length=231, Percent_Identity=32.4675324675325, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7705925, Length=246, Percent_Identity=29.2682926829268, Blast_Score=92, Evalue=7e-19, Organism=Homo sapiens, GI109715829, Length=242, Percent_Identity=28.9256198347107, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI4503817, Length=198, Percent_Identity=30.3030303030303, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=29.6875, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4758504, Length=267, Percent_Identity=28.8389513108614, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI142976729, Length=210, Percent_Identity=30.4761904761905, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=32.6315789473684, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=37.5, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI223718074, Length=208, Percent_Identity=31.7307692307692, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI40807363, Length=203, Percent_Identity=29.5566502463054, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI83715985, Length=269, Percent_Identity=28.996282527881, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI32455239, Length=207, Percent_Identity=27.536231884058, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI5031765, Length=207, Percent_Identity=27.536231884058, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI40548397, Length=188, Percent_Identity=30.8510638297872, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI214010158, Length=188, Percent_Identity=30.8510638297872, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI214010156, Length=188, Percent_Identity=30.8510638297872, Blast_Score=65, Evalue=5e-11, Organism=Homo sapiens, GI22758144, Length=188, Percent_Identity=30.8510638297872, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=36.8, Blast_Score=138, Evalue=3e-34, Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=33.6, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=33.0645161290323, Blast_Score=117, Evalue=6e-28, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=32.3886639676113, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=35.7429718875502, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI2367175, Length=255, Percent_Identity=33.7254901960784, Blast_Score=107, Evalue=9e-25, Organism=Escherichia coli, GI2367365, Length=243, Percent_Identity=31.6872427983539, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=34.8178137651822, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=31.3253012048193, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI87082160, Length=247, Percent_Identity=30.3643724696356, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787905, Length=259, Percent_Identity=32.8185328185328, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1786701, Length=200, Percent_Identity=33, Blast_Score=87, Evalue=8e-19, Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=29.0502793296089, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=29.9180327868852, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=25.390625, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=32.5490196078431, Blast_Score=130, Evalue=6e-31, Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=35, Blast_Score=130, Evalue=9e-31, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=33.7078651685393, Blast_Score=126, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=34.5864661654135, Blast_Score=123, Evalue=8e-29, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=35.9550561797753, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=34.4569288389513, Blast_Score=118, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=34.3511450381679, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI193204405, Length=261, Percent_Identity=34.0996168582375, Blast_Score=117, Evalue=6e-27, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=33.7078651685393, Blast_Score=117, Evalue=7e-27, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=35.0597609561753, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=30.8, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.824427480916, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=33.0798479087452, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=32.6693227091633, Blast_Score=114, Evalue=5e-26, Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=34.8837209302326, Blast_Score=112, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=33.8582677165354, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=31.5384615384615, Blast_Score=110, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=32.7137546468402, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=33.0855018587361, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=31.6981132075472, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=32.1428571428571, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17565030, Length=266, Percent_Identity=31.203007518797, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=32.0610687022901, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17544670, Length=266, Percent_Identity=28.9473684210526, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI115534694, Length=251, Percent_Identity=31.8725099601594, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17536025, Length=252, Percent_Identity=29.3650793650794, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17536651, Length=255, Percent_Identity=28.6274509803922, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538182, Length=257, Percent_Identity=30.3501945525292, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17561272, Length=255, Percent_Identity=30.1960784313725, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=32.2916666666667, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI193203117, Length=261, Percent_Identity=28.735632183908, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI193203115, Length=249, Percent_Identity=28.9156626506024, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17508651, Length=247, Percent_Identity=25.9109311740891, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=31.2, Blast_Score=106, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6322227, Length=198, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6322067, Length=178, Percent_Identity=33.7078651685393, Blast_Score=90, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=29.4354838709677, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6322226, Length=205, Percent_Identity=30.2439024390244, Blast_Score=75, Evalue=7e-15, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=36.144578313253, Blast_Score=151, Evalue=4e-37, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=36.5079365079365, Blast_Score=147, Evalue=7e-36, Organism=Drosophila melanogaster, GI21357041, Length=245, Percent_Identity=37.5510204081633, Blast_Score=138, Evalue=3e-33, Organism=Drosophila melanogaster, GI28571526, Length=245, Percent_Identity=36.734693877551, Blast_Score=137, Evalue=7e-33, Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=33.0645161290323, Blast_Score=130, Evalue=7e-31, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=34.4, Blast_Score=120, Evalue=7e-28, Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=33.0612244897959, Blast_Score=117, Evalue=5e-27, Organism=Drosophila melanogaster, GI24644337, Length=255, Percent_Identity=34.5098039215686, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI17737361, Length=255, Percent_Identity=29.4117647058824, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=31.6062176165803, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24640492, Length=189, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI116007236, Length=213, Percent_Identity=27.6995305164319, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI281364892, Length=179, Percent_Identity=30.1675977653631, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI281364494, Length=200, Percent_Identity=29.5, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641232, Length=203, Percent_Identity=30.0492610837438, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21356301, Length=237, Percent_Identity=24.8945147679325, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641388, Length=207, Percent_Identity=30.4347826086957, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007234, Length=244, Percent_Identity=26.6393442622951, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=26.3736263736264, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI24581726, Length=193, Percent_Identity=26.9430051813472, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26680; Mature: 26680
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHNHGQKLAGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIGRNVT CCCCCCCHHCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCC TVAGDVSRLEDLDRLYVAVKEKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGL EECCCHHHHHHHHHHHEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEH FFTVQKALPLFKDGGSIILTSSVSNVLGLPGFSAYAASKAAVRNFARGWTLELKDRKIRV EEEEHHHCCEEECCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEE NCLSPGAIDTPALATTTGLTAEQAEQAAAQFTTQIPMGRRGMPEEIAAAVVFLASDESSY EEECCCCCCCCCHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCE ITGADLAVDGGMAQV EECCCEEECCCCCCC >Mature Secondary Structure MNHNHGQKLAGKIAVITGGSSGIGLATAKRFVEEGAHVVITGRREKELKEAAAFIGRNVT CCCCCCCHHCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCC TVAGDVSRLEDLDRLYVAVKEKHGHIDVLFANAGAGTIAPLAAATEAHFDQTFDVNVKGL EECCCHHHHHHHHHHHEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEEEEH FFTVQKALPLFKDGGSIILTSSVSNVLGLPGFSAYAASKAAVRNFARGWTLELKDRKIRV EEEEHHHCCEEECCCCEEEEECCHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEE NCLSPGAIDTPALATTTGLTAEQAEQAAAQFTTQIPMGRRGMPEEIAAAVVFLASDESSY EEECCCCCCCCCHHEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHEEEEEEECCCCCE ITGADLAVDGGMAQV EECCCEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]