Click here to switch to the map view.

The map label for this gene is ysdC [H]

Identifier: 116623557

GI number: 116623557

Start: 5658007

End: 5659131

Strand: Direct

Name: ysdC [H]

Synonym: Acid_4467

Alternate gene names: 116623557

Gene position: 5658007-5659131 (Clockwise)

Preceding gene: 116623551

Following gene: 116623562

Centisome position: 56.78

GC content: 64.8

Gene sequence:

>1125_bases
ATGTATAGATGCGCAATACTCGCCGTCGCCGCAGTCGCGGCTTTCGGACAGGACCGCGTTGCCGGACTGCTCGAGCGCCT
CTCCAACGCGCCCGGACCCTCCGGCTTCGAAGAGCCGGTCCGCAAGATCCTCGTGGACGAGATGAAGCCCTTCGCCGCCT
CCCTCACTTTCGACGGCATGGGCTCGATCATCGCGACCCAGGGCGCCACCGGTCCGCGCGTCATGATCGATGCGCACATG
GACGAATTGGGCGGCATGGTCCGCCGCGTCACCCCAAACGGCTTTCTCACCATCCAGATGTTGGGCGGCTGGCTCGATCA
GGCGCTCGTCGATCAGCGTTGGATCATCATCGGCTCGAAAGGCCCCGTGCGCGCAATCACAGGAATTCGCGATGTCCACG
TGGTCCCTGCCGAGGAACGCGCACGCGTCTACTCGCGCGACAACCTCTTCCTCGACGTCGGAGCAAAAAGCGCCGAGGAG
GTGCGCGCCCTCGGCGTGGAGCCGGGCGACCCGGTGGTTCCCGATTCCCCCTTTGCCATCCTCAACGGCACCGACCAATA
CCTCGGCAAAACCTGGGACGATCGCGTCGGCTGCGCAGTGGTCGTCGAAGCCATGCGGCGTCTCGCCAACGCGCCCCATA
AAGCCCAGCTCTTCTTCGTGATCACCACCCAGGAAGAGGTCGGACTGCGCGGCGCGCATACCGCCGCGGATTTCGTCAAA
CCCGAGATCGCAATCGCACTCGAAGGCGGCGTGGCGGGCGATGCCCCCGGCACGCACCCCGAAGAAACCCAGGCGCGGCT
CGGCGGCGGCCCCGGCATATTCCTATACGATTCCTCGGCGCTGCCCAATCGTAAGTTCACCCAGTATGTGAAGGAGACCG
CACGCGCCGGCCAGATCCCACTGCAACTCGACCTGGTCCAGGGCTATGGCGATGATTCCGCCGAAATCCAGAAGAGCACC
GCCGGTGTGCCCACCGTGAACCTCGTAGTCCCCGCGCGCTACACGCACGCCCACAACGGGATCATCAACCGTAAGGACTT
CGACCGCATGGTGGACCTCCTGGTCGCACTCCTCAACGGCCTCGACGACACCAAGGTCCGCCAAATCCGCGACTTCGCCC
AGTAG

Upstream 100 bases:

>100_bases
GCTGCGCAGGCAGCGCGGCGGAAAAAAAGAAAACCAGGGACACCATGGTACGCATGGATTTGATGATACCCCTACCGGGC
AGAGGTACACTGATCGGGTT

Downstream 100 bases:

>100_bases
TCTTGGTTTTCTTTGCGATCTTTGCGATCTTTGCGAGACAAGCCTTTTTTACAGCTTGGTCAGCCCATCCACCTGCACTT
CCAGAAGATGGTTCACCCGG

Product: cellulase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MYRCAILAVAAVAAFGQDRVAGLLERLSNAPGPSGFEEPVRKILVDEMKPFAASLTFDGMGSIIATQGATGPRVMIDAHM
DELGGMVRRVTPNGFLTIQMLGGWLDQALVDQRWIIIGSKGPVRAITGIRDVHVVPAEERARVYSRDNLFLDVGAKSAEE
VRALGVEPGDPVVPDSPFAILNGTDQYLGKTWDDRVGCAVVVEAMRRLANAPHKAQLFFVITTQEEVGLRGAHTAADFVK
PEIAIALEGGVAGDAPGTHPEETQARLGGGPGIFLYDSSALPNRKFTQYVKETARAGQIPLQLDLVQGYGDDSAEIQKST
AGVPTVNLVVPARYTHAHNGIINRKDFDRMVDLLVALLNGLDDTKVRQIRDFAQ

Sequences:

>Translated_374_residues
MYRCAILAVAAVAAFGQDRVAGLLERLSNAPGPSGFEEPVRKILVDEMKPFAASLTFDGMGSIIATQGATGPRVMIDAHM
DELGGMVRRVTPNGFLTIQMLGGWLDQALVDQRWIIIGSKGPVRAITGIRDVHVVPAEERARVYSRDNLFLDVGAKSAEE
VRALGVEPGDPVVPDSPFAILNGTDQYLGKTWDDRVGCAVVVEAMRRLANAPHKAQLFFVITTQEEVGLRGAHTAADFVK
PEIAIALEGGVAGDAPGTHPEETQARLGGGPGIFLYDSSALPNRKFTQYVKETARAGQIPLQLDLVQGYGDDSAEIQKST
AGVPTVNLVVPARYTHAHNGIINRKDFDRMVDLLVALLNGLDDTKVRQIRDFAQ
>Mature_374_residues
MYRCAILAVAAVAAFGQDRVAGLLERLSNAPGPSGFEEPVRKILVDEMKPFAASLTFDGMGSIIATQGATGPRVMIDAHM
DELGGMVRRVTPNGFLTIQMLGGWLDQALVDQRWIIIGSKGPVRAITGIRDVHVVPAEERARVYSRDNLFLDVGAKSAEE
VRALGVEPGDPVVPDSPFAILNGTDQYLGKTWDDRVGCAVVVEAMRRLANAPHKAQLFFVITTQEEVGLRGAHTAADFVK
PEIAIALEGGVAGDAPGTHPEETQARLGGGPGIFLYDSSALPNRKFTQYVKETARAGQIPLQLDLVQGYGDDSAEIQKST
AGVPTVNLVVPARYTHAHNGIINRKDFDRMVDLLVALLNGLDDTKVRQIRDFAQ

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=353, Percent_Identity=36.2606232294618, Blast_Score=245, Evalue=3e-66,
Organism=Escherichia coli, GI1788727, Length=353, Percent_Identity=33.7110481586402, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI87082417, Length=334, Percent_Identity=29.3413173652695, Blast_Score=161, Evalue=8e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 40274; Mature: 40274

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRCAILAVAAVAAFGQDRVAGLLERLSNAPGPSGFEEPVRKILVDEMKPFAASLTFDGM
CCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHEEEECCC
GSIIATQGATGPRVMIDAHMDELGGMVRRVTPNGFLTIQMLGGWLDQALVDQRWIIIGSK
CCEEEECCCCCCEEEEECCHHHHCCCEEEECCCCEEEEEEHHHHHHHHHHCCEEEEEECC
GPVRAITGIRDVHVVPAEERARVYSRDNLFLDVGAKSAEEVRALGVEPGDPVVPDSPFAI
CCCHHHCCCCEEEEECCHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEE
LNGTDQYLGKTWDDRVGCAVVVEAMRRLANAPHKAQLFFVITTQEEVGLRGAHTAADFVK
ECCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHCCCCCCHHHHHCC
PEIAIALEGGVAGDAPGTHPEETQARLGGGPGIFLYDSSALPNRKFTQYVKETARAGQIP
CEEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
LQLDLVQGYGDDSAEIQKSTAGVPTVNLVVPARYTHAHNGIINRKDFDRMVDLLVALLNG
EEEEEEECCCCCHHHHHHHCCCCCEEEEEECCEEEHHCCCCCCCHHHHHHHHHHHHHHCC
LDDTKVRQIRDFAQ
CCHHHHHHHHHHCC
>Mature Secondary Structure
MYRCAILAVAAVAAFGQDRVAGLLERLSNAPGPSGFEEPVRKILVDEMKPFAASLTFDGM
CCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHEEEECCC
GSIIATQGATGPRVMIDAHMDELGGMVRRVTPNGFLTIQMLGGWLDQALVDQRWIIIGSK
CCEEEECCCCCCEEEEECCHHHHCCCEEEECCCCEEEEEEHHHHHHHHHHCCEEEEEECC
GPVRAITGIRDVHVVPAEERARVYSRDNLFLDVGAKSAEEVRALGVEPGDPVVPDSPFAI
CCCHHHCCCCEEEEECCHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEE
LNGTDQYLGKTWDDRVGCAVVVEAMRRLANAPHKAQLFFVITTQEEVGLRGAHTAADFVK
ECCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCHHHCCCCCCHHHHHCC
PEIAIALEGGVAGDAPGTHPEETQARLGGGPGIFLYDSSALPNRKFTQYVKETARAGQIP
CEEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
LQLDLVQGYGDDSAEIQKSTAGVPTVNLVVPARYTHAHNGIINRKDFDRMVDLLVALLNG
EEEEEEECCCCCHHHHHHHCCCCCEEEEEECCEEEHHCCCCCCCHHHHHHHHHHHHHHCC
LDDTKVRQIRDFAQ
CCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]