Click here to switch to the map view.

The map label for this gene is yvdB [H]

Identifier: 116623550

GI number: 116623550

Start: 5646675

End: 5647961

Strand: Direct

Name: yvdB [H]

Synonym: Acid_4460

Alternate gene names: 116623550

Gene position: 5646675-5647961 (Clockwise)

Preceding gene: 116623549

Following gene: 116623551

Centisome position: 56.66

GC content: 65.73

Gene sequence:

>1287_bases
TTGAGTCCATTCGCGCGCAGACGGCTCGCTCGCGCAAAAGGCTACGACTGGGAGTCGTTTCTGGGAGACTGTTCGGGCGG
CGCGATCGCGGCATTGATCGCGCTCCCGTACGGTCTGGCGATGGCTTCGCTAATGGGGCTCCCGCCGGTCTTGGGTGTCT
TCACGTCGATTCTCACGGCGCCGGTGATCGCCGCGCTGGGACGGAACCCGGTGTTGATCGGCGGCACCGCGAGCGCGACC
GTGCCGTTCATCGCGCTGGCGGTGCGGGGCCAGGGAATCGGTGGCGCGGCGAAGGTTTCAATTGTCGCGTCGGTGATCAT
GATGGGCTTCTGCGTGATCCGTTTGGGGCGCCACATTATGCGTGTGCCGCACGCTGTGGTGACGGGGTTCTCCTGCGGCA
TCGGTGCGATGATGCTGATTTTGCAGCTGGACGTGATTCTGGGTGTGGACTCGGTGGCGACACGGTCGGCGGGTTCGACG
ATCCTGCAATTGGGGGCCGTGATCGAACGGATTGGCAGCACCAGGCTGGCGCCTCTGGCTCTCGGCGTAGTAGTAATGGT
GGGTGCGACACTCTCGGCACGCTGGAGTTCGCGCGCGCCGGCGCCCTTGATCGGCGTGGCGCTGGCGATTGTGCTGGCCA
AGTTCATGGGCTTTCACGAACGGGAGATCGGAGCGCTGCGCGCAGGGATGCCGCCGTTCGTTGGGTTCTCCTGGAATCCG
CAGGACGTGCTGACCGTGCTGCCTTCGGCGTTCGCGCTGGCGTTCGTGTCCAGCGTGAACATTCTCACCACGTCGCGCGT
CGTGGAGCACTTTCGCGGCCGCCATCAGCGTATGAAGACATCTGATGCGGATGCGGAACTGGGCGCGTACGGAATCGCGA
ATCTCTGCGCGGGAATGTTCGGCGCTCCGTTGAGCGTGGGCATTCCGGCACGCAGCCTGGCCGTGGTGCGGTGCGGGGGG
ACCACGCGAATCGCCAACCTGCTGCACGCCGTATTTCTGGGCGCGATTTTGTGGCTGGGTTCAGGCGTCGTCGCGCACGT
CCCGCTGCCCGCCCTGGCCGGCGTCACCGCATGGATGGGACTCTGCCTGCTCGATTGGAGCACGTGGCGGCGCCTGCCGA
AGATGAGCCGCACCGATGCAGCGGCCTTTCTGGTGACGGCGCTTTCGGTGCTGGCAGTCAACGCGGTGCTCGCGGTGGCG
CTGGGCTGTTCGATCTACGGGGTGCGCGCCGCGTATGCGCGCTGGGTGCGTCCGGCTGCGCAGGTTCCGGACTTACAAGT
GGATTAG

Upstream 100 bases:

>100_bases
TCGGGCGCGTCTGGAAGAGTTGGCCCACATACGTGCGCGTTTCCATCGGCACCCAGGAGGAGATGAACAAATTCAAGACG
GCGTTCCTTAAGGTGATGGC

Downstream 100 bases:

>100_bases
GGGATACGAACGCACATTAGCAGTTGCTTACTGACGGTCGCGGCTCAGATCCGAGCCGCAACCGTGAGGGAGCGTCTGCT
ACTTAGGCGACAAACGGGGT

Product: sulfate transporter

Products: Proton [Cytoplasm]; SO42- [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MSPFARRRLARAKGYDWESFLGDCSGGAIAALIALPYGLAMASLMGLPPVLGVFTSILTAPVIAALGRNPVLIGGTASAT
VPFIALAVRGQGIGGAAKVSIVASVIMMGFCVIRLGRHIMRVPHAVVTGFSCGIGAMMLILQLDVILGVDSVATRSAGST
ILQLGAVIERIGSTRLAPLALGVVVMVGATLSARWSSRAPAPLIGVALAIVLAKFMGFHEREIGALRAGMPPFVGFSWNP
QDVLTVLPSAFALAFVSSVNILTTSRVVEHFRGRHQRMKTSDADAELGAYGIANLCAGMFGAPLSVGIPARSLAVVRCGG
TTRIANLLHAVFLGAILWLGSGVVAHVPLPALAGVTAWMGLCLLDWSTWRRLPKMSRTDAAAFLVTALSVLAVNAVLAVA
LGCSIYGVRAAYARWVRPAAQVPDLQVD

Sequences:

>Translated_428_residues
MSPFARRRLARAKGYDWESFLGDCSGGAIAALIALPYGLAMASLMGLPPVLGVFTSILTAPVIAALGRNPVLIGGTASAT
VPFIALAVRGQGIGGAAKVSIVASVIMMGFCVIRLGRHIMRVPHAVVTGFSCGIGAMMLILQLDVILGVDSVATRSAGST
ILQLGAVIERIGSTRLAPLALGVVVMVGATLSARWSSRAPAPLIGVALAIVLAKFMGFHEREIGALRAGMPPFVGFSWNP
QDVLTVLPSAFALAFVSSVNILTTSRVVEHFRGRHQRMKTSDADAELGAYGIANLCAGMFGAPLSVGIPARSLAVVRCGG
TTRIANLLHAVFLGAILWLGSGVVAHVPLPALAGVTAWMGLCLLDWSTWRRLPKMSRTDAAAFLVTALSVLAVNAVLAVA
LGCSIYGVRAAYARWVRPAAQVPDLQVD
>Mature_427_residues
SPFARRRLARAKGYDWESFLGDCSGGAIAALIALPYGLAMASLMGLPPVLGVFTSILTAPVIAALGRNPVLIGGTASATV
PFIALAVRGQGIGGAAKVSIVASVIMMGFCVIRLGRHIMRVPHAVVTGFSCGIGAMMLILQLDVILGVDSVATRSAGSTI
LQLGAVIERIGSTRLAPLALGVVVMVGATLSARWSSRAPAPLIGVALAIVLAKFMGFHEREIGALRAGMPPFVGFSWNPQ
DVLTVLPSAFALAFVSSVNILTTSRVVEHFRGRHQRMKTSDADAELGAYGIANLCAGMFGAPLSVGIPARSLAVVRCGGT
TRIANLLHAVFLGAILWLGSGVVAHVPLPALAGVTAWMGLCLLDWSTWRRLPKMSRTDAAAFLVTALSVLAVNAVLAVAL
GCSIYGVRAAYARWVRPAAQVPDLQVD

Specific function: Possible Sulfate Transporter. [C]

COG id: COG0659

COG function: function code P; Sulfate permease and related transporters (MFS superfamily)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

Organism=Homo sapiens, GI45827802, Length=353, Percent_Identity=24.3626062322946, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI45827800, Length=353, Percent_Identity=24.3626062322946, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87081859, Length=375, Percent_Identity=24, Blast_Score=72, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002645
- InterPro:   IPR001902
- InterPro:   IPR011547 [H]

Pfam domain/function: PF01740 STAS; PF00916 Sulfate_transp [H]

EC number: NA

Molecular weight: Translated: 44448; Mature: 44317

Theoretical pI: Translated: 11.11; Mature: 11.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFARRRLARAKGYDWESFLGDCSGGAIAALIALPYGLAMASLMGLPPVLGVFTSILTA
CCHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PVIAALGRNPVLIGGTASATVPFIALAVRGQGIGGAAKVSIVASVIMMGFCVIRLGRHIM
HHHHHHCCCCEEECCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RVPHAVVTGFSCGIGAMMLILQLDVILGVDSVATRSAGSTILQLGAVIERIGSTRLAPLA
HCCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
LGVVVMVGATLSARWSSRAPAPLIGVALAIVLAKFMGFHEREIGALRAGMPPFVGFSWNP
HHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCH
QDVLTVLPSAFALAFVSSVNILTTSRVVEHFRGRHQRMKTSDADAELGAYGIANLCAGMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
GAPLSVGIPARSLAVVRCGGTTRIANLLHAVFLGAILWLGSGVVAHVPLPALAGVTAWMG
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
LCLLDWSTWRRLPKMSRTDAAAFLVTALSVLAVNAVLAVALGCSIYGVRAAYARWVRPAA
HHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
QVPDLQVD
CCCCCCCC
>Mature Secondary Structure 
SPFARRRLARAKGYDWESFLGDCSGGAIAALIALPYGLAMASLMGLPPVLGVFTSILTA
CHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
PVIAALGRNPVLIGGTASATVPFIALAVRGQGIGGAAKVSIVASVIMMGFCVIRLGRHIM
HHHHHHCCCCEEECCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RVPHAVVTGFSCGIGAMMLILQLDVILGVDSVATRSAGSTILQLGAVIERIGSTRLAPLA
HCCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH
LGVVVMVGATLSARWSSRAPAPLIGVALAIVLAKFMGFHEREIGALRAGMPPFVGFSWNP
HHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCH
QDVLTVLPSAFALAFVSSVNILTTSRVVEHFRGRHQRMKTSDADAELGAYGIANLCAGMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
GAPLSVGIPARSLAVVRCGGTTRIANLLHAVFLGAILWLGSGVVAHVPLPALAGVTAWMG
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
LCLLDWSTWRRLPKMSRTDAAAFLVTALSVLAVNAVLAVALGCSIYGVRAAYARWVRPAA
HHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
QVPDLQVD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; SO42- [Periplasm] [C]

Specific reaction: Proton [Periplasm] + SO42- [Periplasm] = Proton [Cytoplasm] + SO42- [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]