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The map label for this gene is abnA [H]

Identifier: 116623531

GI number: 116623531

Start: 5621283

End: 5622296

Strand: Direct

Name: abnA [H]

Synonym: Acid_4441

Alternate gene names: 116623531

Gene position: 5621283-5622296 (Clockwise)

Preceding gene: 116623529

Following gene: 116623534

Centisome position: 56.41

GC content: 59.27

Gene sequence:

>1014_bases
ATGAAACTCTCTTCGTACTGCGTTGCGGCATTCCTGCTTCTTGAATCTCTGCCCCCAATCGCCCTCGCGGGTGACACCGA
TCCGGCATCACGGGCCGGGCTGCCGCTCGAACAAACCGCCAGCCGGGGCGTCATCACTCGCGATCCGTCCACCATCGTGA
AGTGTAAGGACCAGTTCTGGGTCTTCTATACGGGACGCGGCATTCCTTCGTTTCATTCCAAAGACCTGGTGAAGTGGGAA
CCCGGGCCGGCAGTTTTCCAGACTGCTCCCGAGTGGATTGCCGCAGCCGTTCCCGAGAACCGGAATATGAGCTACTGGGC
TCCCGACATCATCCACCTCGGTGACCGGTATTTGCTCTACTACTCAGTCTCCAGTTTCGGCAAGATCACTTCGGCAATTG
GGCTAGCGTCCACCCCTACTCTCGATCCGGCCGAGCCCTCCTACCACTGGACCGACCACGGGATTGTCGTGCAATCGCGG
GAAGGCGGCGACTTCAACACAATCGACCCCGCGGTGTTCTCCGGCGACGACGGCACCTTGTGGCTTGCCTTCGGCTCCTA
TTGGAGCGGGATCAAGCTCGTGCAGCTCGACCCGAAGACCGGCAAGCGACTGCTCCCCGGCGCGGCGCTCTCATCGCTGG
CTTACAACAAGTCCATCGAAGCGTCGTTCCTCTACAAGCACGATGGCTACTATTATCTCTTCGTCAATTGGGGTTCATGC
TGCCGCGGCGTGGACAGCACTTACAACATCCGTGTTGGACGCAGCCGTAAGGTGACTGGCCCATACCTCGATCAGGATGG
CGTTGACATGCTAAAAGGCGGCGGCACTCTGCTGCTTTCGAACAAAGGGCCGCTCTTTGGACCGGGTCACGCGGGCATTC
TTCGCGATAACGGCAAGAGCTGGTTCACCTCCGATTTTGAGGGCGATGCGCGCATGGGAGGGAAAGCCACTCTCGCCATC
ATGCCGCTTACCTGGAACTCGGACTGGCCCGTAGTGGAAGTCGTCGATAAGTGA

Upstream 100 bases:

>100_bases
GCCCGTTATTCCATGGATGGTCTCGAGTGGTCCGTCTTCCCTTCGACGGTCCCCAACAATAGGAGTCCGCAACATAGGAG
AATGACGCTGGAGACTATCC

Downstream 100 bases:

>100_bases
CACGCTCTCGACCGTGAAGCCGGCTCGGCGCGCTGCAGCACGCCCCCTACCCCCCGAGAAGGCCTGTCTACTCATGACGA
ACGGCGGTAATGGGGTCTAC

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MKLSSYCVAAFLLLESLPPIALAGDTDPASRAGLPLEQTASRGVITRDPSTIVKCKDQFWVFYTGRGIPSFHSKDLVKWE
PGPAVFQTAPEWIAAAVPENRNMSYWAPDIIHLGDRYLLYYSVSSFGKITSAIGLASTPTLDPAEPSYHWTDHGIVVQSR
EGGDFNTIDPAVFSGDDGTLWLAFGSYWSGIKLVQLDPKTGKRLLPGAALSSLAYNKSIEASFLYKHDGYYYLFVNWGSC
CRGVDSTYNIRVGRSRKVTGPYLDQDGVDMLKGGGTLLLSNKGPLFGPGHAGILRDNGKSWFTSDFEGDARMGGKATLAI
MPLTWNSDWPVVEVVDK

Sequences:

>Translated_337_residues
MKLSSYCVAAFLLLESLPPIALAGDTDPASRAGLPLEQTASRGVITRDPSTIVKCKDQFWVFYTGRGIPSFHSKDLVKWE
PGPAVFQTAPEWIAAAVPENRNMSYWAPDIIHLGDRYLLYYSVSSFGKITSAIGLASTPTLDPAEPSYHWTDHGIVVQSR
EGGDFNTIDPAVFSGDDGTLWLAFGSYWSGIKLVQLDPKTGKRLLPGAALSSLAYNKSIEASFLYKHDGYYYLFVNWGSC
CRGVDSTYNIRVGRSRKVTGPYLDQDGVDMLKGGGTLLLSNKGPLFGPGHAGILRDNGKSWFTSDFEGDARMGGKATLAI
MPLTWNSDWPVVEVVDK
>Mature_337_residues
MKLSSYCVAAFLLLESLPPIALAGDTDPASRAGLPLEQTASRGVITRDPSTIVKCKDQFWVFYTGRGIPSFHSKDLVKWE
PGPAVFQTAPEWIAAAVPENRNMSYWAPDIIHLGDRYLLYYSVSSFGKITSAIGLASTPTLDPAEPSYHWTDHGIVVQSR
EGGDFNTIDPAVFSGDDGTLWLAFGSYWSGIKLVQLDPKTGKRLLPGAALSSLAYNKSIEASFLYKHDGYYYLFVNWGSC
CRGVDSTYNIRVGRSRKVTGPYLDQDGVDMLKGGGTLLLSNKGPLFGPGHAGILRDNGKSWFTSDFEGDARMGGKATLAI
MPLTWNSDWPVVEVVDK

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 36822; Mature: 36822

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSSYCVAAFLLLESLPPIALAGDTDPASRAGLPLEQTASRGVITRDPSTIVKCKDQFW
CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCHHHHHCCCEEEECCCEEEEECCEEE
VFYTGRGIPSFHSKDLVKWEPGPAVFQTAPEWIAAAVPENRNMSYWAPDIIHLGDRYLLY
EEEECCCCCCCCCCCCEEECCCCHHHHCCCCHHEEECCCCCCCEEECCHHEECCCEEEEE
YSVSSFGKITSAIGLASTPTLDPAEPSYHWTDHGIVVQSREGGDFNTIDPAVFSGDDGTL
EECCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCEEEECCCCEE
WLAFGSYWSGIKLVQLDPKTGKRLLPGAALSSLAYNKSIEASFLYKHDGYYYLFVNWGSC
EEEECCCCCCEEEEEECCCCCCEECCCHHHHHHHCCCCCCEEEEEEECCEEEEEEECCHH
CRGVDSTYNIRVGRSRKVTGPYLDQDGVDMLKGGGTLLLSNKGPLFGPGHAGILRDNGKS
HCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCC
WFTSDFEGDARMGGKATLAIMPLTWNSDWPVVEVVDK
EEECCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECC
>Mature Secondary Structure
MKLSSYCVAAFLLLESLPPIALAGDTDPASRAGLPLEQTASRGVITRDPSTIVKCKDQFW
CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCCHHHHHCCCEEEECCCEEEEECCEEE
VFYTGRGIPSFHSKDLVKWEPGPAVFQTAPEWIAAAVPENRNMSYWAPDIIHLGDRYLLY
EEEECCCCCCCCCCCCEEECCCCHHHHCCCCHHEEECCCCCCCEEECCHHEECCCEEEEE
YSVSSFGKITSAIGLASTPTLDPAEPSYHWTDHGIVVQSREGGDFNTIDPAVFSGDDGTL
EECCHHHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCEEEECCCCEE
WLAFGSYWSGIKLVQLDPKTGKRLLPGAALSSLAYNKSIEASFLYKHDGYYYLFVNWGSC
EEEECCCCCCEEEEEECCCCCCEECCCHHHHHHHCCCCCCEEEEEEECCEEEEEEECCHH
CRGVDSTYNIRVGRSRKVTGPYLDQDGVDMLKGGGTLLLSNKGPLFGPGHAGILRDNGKS
HCCCCCCEEEEECCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCCCCCCCEEEECCCCC
WFTSDFEGDARMGGKATLAIMPLTWNSDWPVVEVVDK
EEECCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]