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The map label for this gene is clpC [H]

Identifier: 116623526

GI number: 116623526

Start: 5614935

End: 5615948

Strand: Reverse

Name: clpC [H]

Synonym: Acid_4436

Alternate gene names: 116623526

Gene position: 5615948-5614935 (Counterclockwise)

Preceding gene: 116623530

Following gene: 116623525

Centisome position: 56.35

GC content: 59.27

Gene sequence:

>1014_bases
ATGTTCGAGCGCTATACGGAACAAGCACGGCGAACCATTTTTTTCGGCCGCTATGAGGCCAGCCACTTCGGCAGTGCTTT
TATCGAGACCGAACATTTACTGCTCGGGCTGCTGCGCGAGGACAAGGCGCTGACCAACCGCTTTCTTCGCTCGCACGCGG
CAGTGGAGTCGATCCGGAAACAGATCGAGGAGCACTCGGCGCTGGGGCAGAAGATCCCGACCTCGCAGGATCTGCCGCTC
AGCCACGAGTGCAAACGTGTGCTGGCATATGGGGCCGAGGAAGCCCAGCGGCTCAACCACAAGCACATCGGCACTGACCA
TCTACTGCTGGGGCTGATGCGCGAGGAGAAGTGTTTCGCGGCCCAACTGCTCAGCGAACGAGGGCTCACTCTGCACTCGG
TGCGGGCGCAAGTGAAGAGAACGGAATTCCCGCTTGCCGAGGGCGGATCCGTTTCCTTCGCCCGTCTCGACCAGTGGCTC
GCGGAGCGTGAAGCGCGCGGCGACATCTGCAGCGTCAAGGAAGATCGCGTCGCGAACAGAACCACCCACGTCGCCATTTA
CGCGCTCGATCAGCCAAAAGAAAACGAAAAGGGCGAGGATACGGCTCCTGCCGAAGAACTCACGCAGATTCGGAAGCGGA
TCGAGTTCATCGTGGCGAGAATGGAGCACGCGATCGCCAATCACGAATTCGACAAAGCGCGCTTCTATTCGGAAGAAGAA
CGGAAAGAGCGGGAGAAGCTGCGTTTGCTGTGTGCGCAGTTCAACCTGGAAGAACCAGCACCGCGAGTCCCGCTGCTGTG
CATCGAGATCATCCGTGAGGAGGGCTTCTCCGAGGTTCAAAGACGGTGCGACGATTACATCGCTGAAGGTGTTACCCAGG
TCTGGCTGCTGAACCCCGATCTAGAGCGCGCCTATACCGTGACCAAAGCCGAAGGCCTCCGCGAGTTCAGAGGCGCAAAT
CTCCAGTTCGCAAACCCGCCGCTGGAGATCGATCTGAGGACGATCTTCGAGTAG

Upstream 100 bases:

>100_bases
GTTTGTCAACTATACTCATAGGAGATTGGTCCGCCGACCCGCACCCCAATGGAACTTGCGTGCTCCCCCGTCCGCCCTCA
TTTTGGAGTACAGTGCGGAT

Downstream 100 bases:

>100_bases
GTCTTTGTTGTCCTTTTTGTGAGCGATCGCTGCCTCGCAGTGGTCACTGGCCCAAACGGCCTGATCGGCGACCAAACTTG
CCGCCTGAGAGGCGGTTTAC

Product: Clp N terminal domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MFERYTEQARRTIFFGRYEASHFGSAFIETEHLLLGLLREDKALTNRFLRSHAAVESIRKQIEEHSALGQKIPTSQDLPL
SHECKRVLAYGAEEAQRLNHKHIGTDHLLLGLMREEKCFAAQLLSERGLTLHSVRAQVKRTEFPLAEGGSVSFARLDQWL
AEREARGDICSVKEDRVANRTTHVAIYALDQPKENEKGEDTAPAEELTQIRKRIEFIVARMEHAIANHEFDKARFYSEEE
RKEREKLRLLCAQFNLEEPAPRVPLLCIEIIREEGFSEVQRRCDDYIAEGVTQVWLLNPDLERAYTVTKAEGLREFRGAN
LQFANPPLEIDLRTIFE

Sequences:

>Translated_337_residues
MFERYTEQARRTIFFGRYEASHFGSAFIETEHLLLGLLREDKALTNRFLRSHAAVESIRKQIEEHSALGQKIPTSQDLPL
SHECKRVLAYGAEEAQRLNHKHIGTDHLLLGLMREEKCFAAQLLSERGLTLHSVRAQVKRTEFPLAEGGSVSFARLDQWL
AEREARGDICSVKEDRVANRTTHVAIYALDQPKENEKGEDTAPAEELTQIRKRIEFIVARMEHAIANHEFDKARFYSEEE
RKEREKLRLLCAQFNLEEPAPRVPLLCIEIIREEGFSEVQRRCDDYIAEGVTQVWLLNPDLERAYTVTKAEGLREFRGAN
LQFANPPLEIDLRTIFE
>Mature_337_residues
MFERYTEQARRTIFFGRYEASHFGSAFIETEHLLLGLLREDKALTNRFLRSHAAVESIRKQIEEHSALGQKIPTSQDLPL
SHECKRVLAYGAEEAQRLNHKHIGTDHLLLGLMREEKCFAAQLLSERGLTLHSVRAQVKRTEFPLAEGGSVSFARLDQWL
AEREARGDICSVKEDRVANRTTHVAIYALDQPKENEKGEDTAPAEELTQIRKRIEFIVARMEHAIANHEFDKARFYSEEE
RKEREKLRLLCAQFNLEEPAPRVPLLCIEIIREEGFSEVQRRCDDYIAEGVTQVWLLNPDLERAYTVTKAEGLREFRGAN
LQFANPPLEIDLRTIFE

Specific function: Unknown

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 UVR domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR004176
- InterPro:   IPR023150
- InterPro:   IPR001943 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small; PF02151 UVR [H]

EC number: NA

Molecular weight: Translated: 38942; Mature: 38942

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFERYTEQARRTIFFGRYEASHFGSAFIETEHLLLGLLREDKALTNRFLRSHAAVESIRK
CCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIEEHSALGQKIPTSQDLPLSHECKRVLAYGAEEAQRLNHKHIGTDHLLLGLMREEKCFA
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AQLLSERGLTLHSVRAQVKRTEFPLAEGGSVSFARLDQWLAEREARGDICSVKEDRVANR
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
TTHVAIYALDQPKENEKGEDTAPAEELTQIRKRIEFIVARMEHAIANHEFDKARFYSEEE
CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHH
RKEREKLRLLCAQFNLEEPAPRVPLLCIEIIREEGFSEVQRRCDDYIAEGVTQVWLLNPD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHEEEEECCC
LERAYTVTKAEGLREFRGANLQFANPPLEIDLRTIFE
HHHHHHHHHHHHHHHHCCCCCEECCCCCEEHHHHHCC
>Mature Secondary Structure
MFERYTEQARRTIFFGRYEASHFGSAFIETEHLLLGLLREDKALTNRFLRSHAAVESIRK
CCHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIEEHSALGQKIPTSQDLPLSHECKRVLAYGAEEAQRLNHKHIGTDHLLLGLMREEKCFA
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
AQLLSERGLTLHSVRAQVKRTEFPLAEGGSVSFARLDQWLAEREARGDICSVKEDRVANR
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCC
TTHVAIYALDQPKENEKGEDTAPAEELTQIRKRIEFIVARMEHAIANHEFDKARFYSEEE
CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHH
RKEREKLRLLCAQFNLEEPAPRVPLLCIEIIREEGFSEVQRRCDDYIAEGVTQVWLLNPD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHEEEEECCC
LERAYTVTKAEGLREFRGANLQFANPPLEIDLRTIFE
HHHHHHHHHHHHHHHHCCCCCEECCCCCEEHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]