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The map label for this gene is ypmQ [H]

Identifier: 116623469

GI number: 116623469

Start: 5541093

End: 5541644

Strand: Reverse

Name: ypmQ [H]

Synonym: Acid_4379

Alternate gene names: 116623469

Gene position: 5541644-5541093 (Counterclockwise)

Preceding gene: 116623470

Following gene: 116623468

Centisome position: 55.61

GC content: 61.05

Gene sequence:

>552_bases
ATGAGAGGGCTCGGCGTGATCGGCTGCCTCTTGCTGGCCGCGTGCGTGCAGGTGAAGCCGCTGCCTGTGTTGGGCGAGGT
GCCGCAGTTTCAACTGACCGCGTCGGACGATCGCGGGTTCGACAGCAAGTCGCTGGACGGGCACATCTGGATCGCGGACT
TTATTTATACGACCTGCGATGGCCCGTGCCCGATGATGAGCCACCAGATGCGCGGGATCCAGAACTCGACGGCGTCCACG
CCTGAGGTGAAGCTGGTGTCGTTCACGGTGGATCCGGCGCACGATTCGCCGCCGGTGCTGGCGAAGTACAGCAAGCACTT
TCAGGCCGATCCGAATCGCTGGTACTTTCTGACCGGAGAGATGGAGCGGCTCAACGAACTCGGCGTGAAGAGTTTCAAGT
TGAATAACGTGGATGGCAGCCTGAGCCACAGCACGCGCTTCGCGCTGGTGGACGGCAAGCGGCGCATCCGCGGCTACTAT
CTTTCGAGTGACGACGATTTTCCCAAGCGCCTGCTGCACGACATCCATCAGTTGCAGGGCGAACGATCATGA

Upstream 100 bases:

>100_bases
CGGGGGCGGCGGAGAGCTTGGTGGTGACGATCGCGTTCGGCATCGCGCTGCTGCTGCTGAGTGGAATGCTGGCGAGCCAG
AAGGCAACGCGATCGGCGGC

Downstream 100 bases:

>100_bases
TTCATCTATTGCCGACAGTCAATGCGACGCTGAATGCGATTTCGGCGGTGCTGCTGGTGTGGGGCTACACGCTGATCCGG
CGGAAGCAGATCGAAAAGCA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MRGLGVIGCLLLAACVQVKPLPVLGEVPQFQLTASDDRGFDSKSLDGHIWIADFIYTTCDGPCPMMSHQMRGIQNSTAST
PEVKLVSFTVDPAHDSPPVLAKYSKHFQADPNRWYFLTGEMERLNELGVKSFKLNNVDGSLSHSTRFALVDGKRRIRGYY
LSSDDDFPKRLLHDIHQLQGERS

Sequences:

>Translated_183_residues
MRGLGVIGCLLLAACVQVKPLPVLGEVPQFQLTASDDRGFDSKSLDGHIWIADFIYTTCDGPCPMMSHQMRGIQNSTAST
PEVKLVSFTVDPAHDSPPVLAKYSKHFQADPNRWYFLTGEMERLNELGVKSFKLNNVDGSLSHSTRFALVDGKRRIRGYY
LSSDDDFPKRLLHDIHQLQGERS
>Mature_183_residues
MRGLGVIGCLLLAACVQVKPLPVLGEVPQFQLTASDDRGFDSKSLDGHIWIADFIYTTCDGPCPMMSHQMRGIQNSTAST
PEVKLVSFTVDPAHDSPPVLAKYSKHFQADPNRWYFLTGEMERLNELGVKSFKLNNVDGSLSHSTRFALVDGKRRIRGYY
LSSDDDFPKRLLHDIHQLQGERS

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 20482; Mature: 20482

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLGVIGCLLLAACVQVKPLPVLGEVPQFQLTASDDRGFDSKSLDGHIWIADFIYTTCD
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHHHCCC
GPCPMMSHQMRGIQNSTASTPEVKLVSFTVDPAHDSPPVLAKYSKHFQADPNRWYFLTGE
CCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECC
MERLNELGVKSFKLNNVDGSLSHSTRFALVDGKRRIRGYYLSSDDDFPKRLLHDIHQLQG
HHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCC
ERS
CCC
>Mature Secondary Structure
MRGLGVIGCLLLAACVQVKPLPVLGEVPQFQLTASDDRGFDSKSLDGHIWIADFIYTTCD
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHHHCCC
GPCPMMSHQMRGIQNSTASTPEVKLVSFTVDPAHDSPPVLAKYSKHFQADPNRWYFLTGE
CCCCHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEEECC
MERLNELGVKSFKLNNVDGSLSHSTRFALVDGKRRIRGYYLSSDDDFPKRLLHDIHQLQG
HHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEEECCCCCHHHHHHHHHHHHCC
ERS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]