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The map label for this gene is xynB [H]

Identifier: 116623282

GI number: 116623282

Start: 5315901

End: 5316764

Strand: Direct

Name: xynB [H]

Synonym: Acid_4189

Alternate gene names: 116623282

Gene position: 5315901-5316764 (Clockwise)

Preceding gene: 116623281

Following gene: 116623283

Centisome position: 53.34

GC content: 64.24

Gene sequence:

>864_bases
ATGACCGCACTCCGCCTGCTTCTTCTCTGCGCCTCCCTCGCCGTTGCCGCCGACCGGCCCGAGGTGCCGCTCTGGCCCAA
CGGAGCACCCGGTTCCCAAGGCAAAACCGCCAGGGAAATCGACGAGGCGCCCAACAAAGATCACGGCTACCTCAAGGTCA
CCGAAGTGCACAACCCATCGCTCACGGTCTTTCTTCCGCCGCCCGATAAGGCCACCGGAGCCGCGGTCATCATCGCGCCG
GGCGGCGGCCACCGCTTCCTCAACTTCGACCAGGAAGGCACGTACGTCGCCGAGTATCTGAACAGCATCGGTGTCACCGG
ACTGGTGCTGAAATATCGCCTGGCGCGCGAACCGGGTTCCACCTACAAAATCGAAGAGCACGCGCTGGCAGACGCGCAGC
GCGCCATCCGGATGGTGCGCGCCCGCGCGGCCGAGGGTAACCTCGACCCCGCACGCATCGGCATCATGGGCTTCTCCGCC
GGCGGCGAAGTCGCGGCGCTCGCCGCCACCCGCTTCGATTCCGGCAAACCCGACGCCGCCGACCCCATCGATCGCGTCAG
TTCACGTCCCGATTTCGTGGCCCTGATCTATCCCGGCATCCGTGCCGACCAGTACACCATTCCCAAGGACATGCCCGTCA
CCTTCATGCTCTGCGCCGATAACGATGCGGGCCCCTCCGCCGCCCTCGCCGGCCTTTATCCCATGCTCAAGGCGGCCAAA
ATCCAGTCCGAGCTTCACGTTTATGCAACCGGAGGTCATGGCTTCGGCGTCAATCCTAATACGAAGAGTCAGGCGCCCGT
CGCTACTACCTGGCAGCTCCGCTTCGGTGACTGGCTGAAAACCATCGGCATGACTAAACAGTGA

Upstream 100 bases:

>100_bases
CAACTCGGTCCGCCCCGGCATGCTCGCCCACGCCTGGCAGGACACCATGAGCGGCCTCCTCGGCAGCATCATCCGGCGCT
AACGGCGCTATCCTAACCGC

Downstream 100 bases:

>100_bases
TGTCCACTCGCCGCGAGTTTCTGGCCGCCGCCGCGCTGCTGCCGCTGCGCGCGCAGGACCTTCCCACCTTTACCACCGAT
ATCAAACTGATCACGGTCCT

Product: putative endo-1,4-beta-xylanase B

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTALRLLLLCASLAVAADRPEVPLWPNGAPGSQGKTAREIDEAPNKDHGYLKVTEVHNPSLTVFLPPPDKATGAAVIIAP
GGGHRFLNFDQEGTYVAEYLNSIGVTGLVLKYRLAREPGSTYKIEEHALADAQRAIRMVRARAAEGNLDPARIGIMGFSA
GGEVAALAATRFDSGKPDAADPIDRVSSRPDFVALIYPGIRADQYTIPKDMPVTFMLCADNDAGPSAALAGLYPMLKAAK
IQSELHVYATGGHGFGVNPNTKSQAPVATTWQLRFGDWLKTIGMTKQ

Sequences:

>Translated_287_residues
MTALRLLLLCASLAVAADRPEVPLWPNGAPGSQGKTAREIDEAPNKDHGYLKVTEVHNPSLTVFLPPPDKATGAAVIIAP
GGGHRFLNFDQEGTYVAEYLNSIGVTGLVLKYRLAREPGSTYKIEEHALADAQRAIRMVRARAAEGNLDPARIGIMGFSA
GGEVAALAATRFDSGKPDAADPIDRVSSRPDFVALIYPGIRADQYTIPKDMPVTFMLCADNDAGPSAALAGLYPMLKAAK
IQSELHVYATGGHGFGVNPNTKSQAPVATTWQLRFGDWLKTIGMTKQ
>Mature_286_residues
TALRLLLLCASLAVAADRPEVPLWPNGAPGSQGKTAREIDEAPNKDHGYLKVTEVHNPSLTVFLPPPDKATGAAVIIAPG
GGHRFLNFDQEGTYVAEYLNSIGVTGLVLKYRLAREPGSTYKIEEHALADAQRAIRMVRARAAEGNLDPARIGIMGFSAG
GEVAALAATRFDSGKPDAADPIDRVSSRPDFVALIYPGIRADQYTIPKDMPVTFMLCADNDAGPSAALAGLYPMLKAAKI
QSELHVYATGGHGFGVNPNTKSQAPVATTWQLRFGDWLKTIGMTKQ

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 30607; Mature: 30476

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALRLLLLCASLAVAADRPEVPLWPNGAPGSQGKTAREIDEAPNKDHGYLKVTEVHNPS
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCE
LTVFLPPPDKATGAAVIIAPGGGHRFLNFDQEGTYVAEYLNSIGVTGLVLKYRLAREPGS
EEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCCC
TYKIEEHALADAQRAIRMVRARAAEGNLDPARIGIMGFSAGGEVAALAATRFDSGKPDAA
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCCCEEEEEEECCCCCCCCCC
DPIDRVSSRPDFVALIYPGIRADQYTIPKDMPVTFMLCADNDAGPSAALAGLYPMLKAAK
CHHHHHCCCCCEEEEEECCCCCCCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
IQSELHVYATGGHGFGVNPNTKSQAPVATTWQLRFGDWLKTIGMTKQ
HHCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHCCCCC
>Mature Secondary Structure 
TALRLLLLCASLAVAADRPEVPLWPNGAPGSQGKTAREIDEAPNKDHGYLKVTEVHNPS
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEECCCE
LTVFLPPPDKATGAAVIIAPGGGHRFLNFDQEGTYVAEYLNSIGVTGLVLKYRLAREPGS
EEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHCCCCC
TYKIEEHALADAQRAIRMVRARAAEGNLDPARIGIMGFSAGGEVAALAATRFDSGKPDAA
CEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCCCEEEEEEECCCCCCCCCC
DPIDRVSSRPDFVALIYPGIRADQYTIPKDMPVTFMLCADNDAGPSAALAGLYPMLKAAK
CHHHHHCCCCCEEEEEECCCCCCCEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
IQSELHVYATGGHGFGVNPNTKSQAPVATTWQLRFGDWLKTIGMTKQ
HHCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]