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The map label for this gene is abfA [H]

Identifier: 116623106

GI number: 116623106

Start: 5081500

End: 5083002

Strand: Direct

Name: abfA [H]

Synonym: Acid_4010

Alternate gene names: 116623106

Gene position: 5081500-5083002 (Clockwise)

Preceding gene: 116623102

Following gene: 116623107

Centisome position: 50.99

GC content: 65.2

Gene sequence:

>1503_bases
ATGCTCGCCCGCCGGGAGTTTCTCACGCTTGCCGCCACCCCGCTGTTGGCCGACGACGCCACCGCAATTGTGCTGGATCC
CACACCGCGGTTCGAGATCTCGCCCCACCTCTATATGCAATTCATGGAGCCGCTGGGCGTCACCGATTCCTCCGTGGAAG
CCGCATGGTATTACGACCAGGACGACTGGCGCAAAGATTTCGTGGACACCGTCCGCGACCTCGCGCCCGGCGCAATGCGC
TTCGGCGGGCTGTTCAGCCGCTACTATCACTGGCGCGAAGGCGTGGGTCCTGTGGCGCAGCGGCCTACGATGCGCAACTA
CGTGTGGGGCGGCGTCGAGACCAACCGCGTGGGCACGCGCGAGTTCGTGGACCTGTGCCGCCGGACCGGCGCCGACCCGC
TGTATTGCGTCAACTTTCTGAGCGACGGCGAGCAGCGCTATCGCACCATGAAGGAAGGCAATCGCACGGGCGACGCGCGC
GAGGCGGCCGAGTGGGTCAGCTACGCCAACGATCCCGACCACCGAGAGCGCCGTCAGCACGGCTCGCCGGAGCCCTTGGG
TATCAAGCTCTGGCAGCTCGGCAACGAGACGTCCTACGGGAATGTGACTTTCACGCGCGACGAATCGATCGCGCACACGG
TGGAGTTCGCCAGGGCGATGAAGGAGCGCGACGCTTCGATTCGGCTGATCGGTTGGGGCGATCGCGGACGGGGCGCGGGG
CTGTGGGCGCCGCAACTGCTGGAGCGCGCCGGCGAGTATCTGGATTGCGTGGCGATTCACATGATGGGCCAGAATCCGAA
GCGCCCGGACACGGTGCTGAAGGGACTGCGGTACGAGCATGATCCCGAACGCGCCTGGGAGGAATTGCTGGAGCTGGCGG
ACAACGTGGAGAAGCGCGTCACCGAGCTGGAGCAAACGATCGCCGGCTTCGATAAGCGCATCGGCATCGCGATTACCGAA
GGCCACTTGAGCCTGAGCCCGCACAACGCCAATCCGATTCTGTACGAGTGGCTCTCGGCTGCGTACCATGCGCGCTCGTT
GAACATCTACCAGCGCCACGGCGCGCGCGTGAAGATCGCGACAGCGGCGGACTTCCAGGGCAATCGCTGGACCAACAACG
CGGTGATGCTGCAAACTCCGCGCGGCGTCACGTACCTGATGCCGGTGGGCTCGATCGCGCGCCTCTTCAAGCGCCATAAC
GGCACGCACGGCGTCACGGTGAAAGCGGCGCCGCCAGGGCTGGATATCGCGGCCAGCCGCGCGGGAAACAAGGTGTACCT
GCACATCGCGAACCTGGAATATCGTAAAACGGTGGAAGCGAGGTTTGCCCTCGAGGGGCTTGCCGTAAACAGCGGGCGCG
TGTTTCAAATCGCGCCGGGTAATCTGCGCGAGGCGGTGAATCAGGATCAGCCCAACGTTTTCGCGGAAAAGGAGTCGCCG
CTGACCGGCAGCTGGCGCTTCCCGGCGGGCGCGGTGGCGGCGGTGGAGTTGGAGGTGGCTTGA

Upstream 100 bases:

>100_bases
TTGCTACTTCCATGATGACTCTCCTCCACTCCATCTTGGGAGAGGCGCCGATGGGAAACACTCCGCCGCTTGCTTTCAAA
TTCTGTGACACACTGACGGC

Downstream 100 bases:

>100_bases
ACAAACCTTCGCGTTTGTATTCGCTCGACGCGCTGCGCGGCTTAGTCATGATCATCATGGCGCTGGACCACGTGCGCGAT
TTCGTGCATTCGCAGGCGAT

Product: alpha-L-arabinofuranosidase-like protein

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 500; Mature: 500

Protein sequence:

>500_residues
MLARREFLTLAATPLLADDATAIVLDPTPRFEISPHLYMQFMEPLGVTDSSVEAAWYYDQDDWRKDFVDTVRDLAPGAMR
FGGLFSRYYHWREGVGPVAQRPTMRNYVWGGVETNRVGTREFVDLCRRTGADPLYCVNFLSDGEQRYRTMKEGNRTGDAR
EAAEWVSYANDPDHRERRQHGSPEPLGIKLWQLGNETSYGNVTFTRDESIAHTVEFARAMKERDASIRLIGWGDRGRGAG
LWAPQLLERAGEYLDCVAIHMMGQNPKRPDTVLKGLRYEHDPERAWEELLELADNVEKRVTELEQTIAGFDKRIGIAITE
GHLSLSPHNANPILYEWLSAAYHARSLNIYQRHGARVKIATAADFQGNRWTNNAVMLQTPRGVTYLMPVGSIARLFKRHN
GTHGVTVKAAPPGLDIAASRAGNKVYLHIANLEYRKTVEARFALEGLAVNSGRVFQIAPGNLREAVNQDQPNVFAEKESP
LTGSWRFPAGAVAAVELEVA

Sequences:

>Translated_500_residues
MLARREFLTLAATPLLADDATAIVLDPTPRFEISPHLYMQFMEPLGVTDSSVEAAWYYDQDDWRKDFVDTVRDLAPGAMR
FGGLFSRYYHWREGVGPVAQRPTMRNYVWGGVETNRVGTREFVDLCRRTGADPLYCVNFLSDGEQRYRTMKEGNRTGDAR
EAAEWVSYANDPDHRERRQHGSPEPLGIKLWQLGNETSYGNVTFTRDESIAHTVEFARAMKERDASIRLIGWGDRGRGAG
LWAPQLLERAGEYLDCVAIHMMGQNPKRPDTVLKGLRYEHDPERAWEELLELADNVEKRVTELEQTIAGFDKRIGIAITE
GHLSLSPHNANPILYEWLSAAYHARSLNIYQRHGARVKIATAADFQGNRWTNNAVMLQTPRGVTYLMPVGSIARLFKRHN
GTHGVTVKAAPPGLDIAASRAGNKVYLHIANLEYRKTVEARFALEGLAVNSGRVFQIAPGNLREAVNQDQPNVFAEKESP
LTGSWRFPAGAVAAVELEVA
>Mature_500_residues
MLARREFLTLAATPLLADDATAIVLDPTPRFEISPHLYMQFMEPLGVTDSSVEAAWYYDQDDWRKDFVDTVRDLAPGAMR
FGGLFSRYYHWREGVGPVAQRPTMRNYVWGGVETNRVGTREFVDLCRRTGADPLYCVNFLSDGEQRYRTMKEGNRTGDAR
EAAEWVSYANDPDHRERRQHGSPEPLGIKLWQLGNETSYGNVTFTRDESIAHTVEFARAMKERDASIRLIGWGDRGRGAG
LWAPQLLERAGEYLDCVAIHMMGQNPKRPDTVLKGLRYEHDPERAWEELLELADNVEKRVTELEQTIAGFDKRIGIAITE
GHLSLSPHNANPILYEWLSAAYHARSLNIYQRHGARVKIATAADFQGNRWTNNAVMLQTPRGVTYLMPVGSIARLFKRHN
GTHGVTVKAAPPGLDIAASRAGNKVYLHIANLEYRKTVEARFALEGLAVNSGRVFQIAPGNLREAVNQDQPNVFAEKESP
LTGSWRFPAGAVAAVELEVA

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 56193; Mature: 56193

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLARREFLTLAATPLLADDATAIVLDPTPRFEISPHLYMQFMEPLGVTDSSVEAAWYYDQ
CCCHHHHHHHHCCCEECCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
DDWRKDFVDTVRDLAPGAMRFGGLFSRYYHWREGVGPVAQRPTMRNYVWGGVETNRVGTR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHEEECCCCCCCCCHH
EFVDLCRRTGADPLYCVNFLSDGEQRYRTMKEGNRTGDAREAAEWVSYANDPDHRERRQH
HHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHC
GSPEPLGIKLWQLGNETSYGNVTFTRDESIAHTVEFARAMKERDASIRLIGWGDRGRGAG
CCCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
LWAPQLLERAGEYLDCVAIHMMGQNPKRPDTVLKGLRYEHDPERAWEELLELADNVEKRV
CCHHHHHHHHCHHHHHHHEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TELEQTIAGFDKRIGIAITEGHLSLSPHNANPILYEWLSAAYHARSLNIYQRHGARVKIA
HHHHHHHHHHCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEEE
TAADFQGNRWTNNAVMLQTPRGVTYLMPVGSIARLFKRHNGTHGVTVKAAPPGLDIAASR
EECCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHHCCCCCCEEEEECCCCCCEECCC
AGNKVYLHIANLEYRKTVEARFALEGLAVNSGRVFQIAPGNLREAVNQDQPNVFAEKESP
CCCEEEEEEECCCHHHHHHHHHHEEEEEECCCCEEEECCCHHHHHHCCCCCCEEECCCCC
LTGSWRFPAGAVAAVELEVA
CCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MLARREFLTLAATPLLADDATAIVLDPTPRFEISPHLYMQFMEPLGVTDSSVEAAWYYDQ
CCCHHHHHHHHCCCEECCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECC
DDWRKDFVDTVRDLAPGAMRFGGLFSRYYHWREGVGPVAQRPTMRNYVWGGVETNRVGTR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHCCCCHHHEEECCCCCCCCCHH
EFVDLCRRTGADPLYCVNFLSDGEQRYRTMKEGNRTGDAREAAEWVSYANDPDHRERRQH
HHHHHHHHCCCCCEEEEHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHC
GSPEPLGIKLWQLGNETSYGNVTFTRDESIAHTVEFARAMKERDASIRLIGWGDRGRGAG
CCCCCCCEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
LWAPQLLERAGEYLDCVAIHMMGQNPKRPDTVLKGLRYEHDPERAWEELLELADNVEKRV
CCHHHHHHHHCHHHHHHHEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
TELEQTIAGFDKRIGIAITEGHLSLSPHNANPILYEWLSAAYHARSLNIYQRHGARVKIA
HHHHHHHHHHCCCEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHCCCEEEEE
TAADFQGNRWTNNAVMLQTPRGVTYLMPVGSIARLFKRHNGTHGVTVKAAPPGLDIAASR
EECCCCCCCCCCCEEEEECCCCCEEEECHHHHHHHHHHCCCCCCEEEEECCCCCCEECCC
AGNKVYLHIANLEYRKTVEARFALEGLAVNSGRVFQIAPGNLREAVNQDQPNVFAEKESP
CCCEEEEEEECCCHHHHHHHHHHEEEEEECCCCEEEECCCHHHHHHCCCCCCEEECCCCC
LTGSWRFPAGAVAAVELEVA
CCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]