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The map label for this gene is yigC [C]

Identifier: 116623041

GI number: 116623041

Start: 4989631

End: 4991076

Strand: Direct

Name: yigC [C]

Synonym: Acid_3945

Alternate gene names: 116623041

Gene position: 4989631-4991076 (Clockwise)

Preceding gene: 116623036

Following gene: 116623047

Centisome position: 50.07

GC content: 60.17

Gene sequence:

>1446_bases
ATGGCATATCAGGATCTGCGCGAATTCGTGCGCGCACTGGAAAAGAACAACGAACTCAAGCGCATCAAGGTCGAAGTGGA
TCCCATCCTCGAGATCACGGAGTTTGCGGATCGCGCGGTGAAACAGGGCGGCCCGGCGCTGCTGTTCGAGAATCCCAAAG
GCTACAAAATCCCGGTGCTGATCAACAGCTTCGCGTCGATGCGGAAGATGGAACTCGCGCTGGAAGTGAAGTCGGTGGAA
GAAGTGGCGCAGCGCATCGTGGAGTTCCTGGAGATGCGTATGCCGGAGGGCCTGATCGGGAAGCTCAAGATGCTGCCGAA
GCTGGCCGAAATGGGCGCGTTCTTTCCGAAGATCGTAGGCAAAGGTCCGTGCCAGGAAGTAGTAAAGACGGACGGATTTT
CGCTGCTCGATTTTCCGGTGCTGCAATGCTGGCCGGACGATGGCGGCCGCTACATCACGCTGCCGCTGGTCTTCTCGCGC
AATCCCGAGACCGGGAAGCGCAACTGCGGCATGTATCGCATGCAGGTGTATGACGAACGCACGGCGGGCATGCACTGGCA
GACGCACAAGCAGGGAGCGGAGCACGCGCGCCGCATGCAGCACCAGGGCAAGAAGCGGATGGACGTGGCGGTGGCGATCG
GCGCCGACCCGGCGACTATGTATTCGGCGATCCTCCCGCTGCCGCCGGACCTGGACGAGATGATGATTTCGGGCTTCCTG
CGCGGCAGCCCGGTCGAGATGGTGAAGTGCCAGACTTGCGACCTGGAGGTCCCGGCGAACGCGGAGATCGTGCTCGAAGG
CTACGTGGAGCTCGGAGAGCTACGCACTGAGGGACCGTTCGGCGATCACACTGGCTTCTATTCGCTGGCCGATGAATACC
CGGTCTTCCACGTGACCTGCGTGACCCATCGCAAGGATCCGATCTATGTGACCACAATTGTGGGGCCGCCGCCCATGGAG
GACTATTACATGGGCAAGGCGATCGAGCGGATTTTCCTGCCGCTGATGCGAATGCAATTGCCGGAGGTTCGCGATATCTC
CATGCCGGCCGAAGGCATCTTTCACAATCTGATTCTGGTCTCGATTCGCAAGAGCTATCCGGGGCACGCGCGCAAGGTGA
TGCACTCCATCTGGGGAACGGGGCAGGCCATGTTCTCCAAGGTGATCGTGGTGGTGGATGAAGACGTGGATGTGCAGAAC
TACAGCGAAGTGGCGTGGAAGGCCTTCAACAATATCGATCCGGAACGCGATATTCAGTTCGTGATGGGCCCGGTGGATTC
GCTGGATCATGCCAGCCGGCTGGTGAATTACGGTTCGAAGATGGGGGTAGACGCAACGCGCAAGTGGCCGGGAGAGGGCT
TCACGCGGCCGTGGCCGGACGTGATCACGATGGATTCCGAGGTCAAGCGCCGGGTCGATGACCTGTGGAAGAAGGCCGGG
CTTTAG

Upstream 100 bases:

>100_bases
ACAAAGGCCACTCGGTTAAACATGCGTTCTCCTCAGGACGTTTTGGTATGAAATCCAATCATAACCGATTGCACCGCCTT
GCTACCATAACGGTATCCCT

Downstream 100 bases:

>100_bases
CGCCGGGGCGGAGCGGATTGGTGGGCGTGCAGAGCCTTCCACGCGCCGTCTTTGCGGACGAAGATCACGGTTTGCGCGAA
AGGCGAGACAACCGTGGCGC

Product: 3-octaprenyl-4hydroxybenzoate decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 481; Mature: 480

Protein sequence:

>481_residues
MAYQDLREFVRALEKNNELKRIKVEVDPILEITEFADRAVKQGGPALLFENPKGYKIPVLINSFASMRKMELALEVKSVE
EVAQRIVEFLEMRMPEGLIGKLKMLPKLAEMGAFFPKIVGKGPCQEVVKTDGFSLLDFPVLQCWPDDGGRYITLPLVFSR
NPETGKRNCGMYRMQVYDERTAGMHWQTHKQGAEHARRMQHQGKKRMDVAVAIGADPATMYSAILPLPPDLDEMMISGFL
RGSPVEMVKCQTCDLEVPANAEIVLEGYVELGELRTEGPFGDHTGFYSLADEYPVFHVTCVTHRKDPIYVTTIVGPPPME
DYYMGKAIERIFLPLMRMQLPEVRDISMPAEGIFHNLILVSIRKSYPGHARKVMHSIWGTGQAMFSKVIVVVDEDVDVQN
YSEVAWKAFNNIDPERDIQFVMGPVDSLDHASRLVNYGSKMGVDATRKWPGEGFTRPWPDVITMDSEVKRRVDDLWKKAG
L

Sequences:

>Translated_481_residues
MAYQDLREFVRALEKNNELKRIKVEVDPILEITEFADRAVKQGGPALLFENPKGYKIPVLINSFASMRKMELALEVKSVE
EVAQRIVEFLEMRMPEGLIGKLKMLPKLAEMGAFFPKIVGKGPCQEVVKTDGFSLLDFPVLQCWPDDGGRYITLPLVFSR
NPETGKRNCGMYRMQVYDERTAGMHWQTHKQGAEHARRMQHQGKKRMDVAVAIGADPATMYSAILPLPPDLDEMMISGFL
RGSPVEMVKCQTCDLEVPANAEIVLEGYVELGELRTEGPFGDHTGFYSLADEYPVFHVTCVTHRKDPIYVTTIVGPPPME
DYYMGKAIERIFLPLMRMQLPEVRDISMPAEGIFHNLILVSIRKSYPGHARKVMHSIWGTGQAMFSKVIVVVDEDVDVQN
YSEVAWKAFNNIDPERDIQFVMGPVDSLDHASRLVNYGSKMGVDATRKWPGEGFTRPWPDVITMDSEVKRRVDDLWKKAG
L
>Mature_480_residues
AYQDLREFVRALEKNNELKRIKVEVDPILEITEFADRAVKQGGPALLFENPKGYKIPVLINSFASMRKMELALEVKSVEE
VAQRIVEFLEMRMPEGLIGKLKMLPKLAEMGAFFPKIVGKGPCQEVVKTDGFSLLDFPVLQCWPDDGGRYITLPLVFSRN
PETGKRNCGMYRMQVYDERTAGMHWQTHKQGAEHARRMQHQGKKRMDVAVAIGADPATMYSAILPLPPDLDEMMISGFLR
GSPVEMVKCQTCDLEVPANAEIVLEGYVELGELRTEGPFGDHTGFYSLADEYPVFHVTCVTHRKDPIYVTTIVGPPPMED
YYMGKAIERIFLPLMRMQLPEVRDISMPAEGIFHNLILVSIRKSYPGHARKVMHSIWGTGQAMFSKVIVVVDEDVDVQNY
SEVAWKAFNNIDPERDIQFVMGPVDSLDHASRLVNYGSKMGVDATRKWPGEGFTRPWPDVITMDSEVKRRVDDLWKKAGL

Specific function: Unknown

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=488, Percent_Identity=41.8032786885246, Blast_Score=399, Evalue=1e-112,
Organism=Saccharomyces cerevisiae, GI6320748, Length=522, Percent_Identity=24.5210727969349, Blast_Score=102, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR022390
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 54504; Mature: 54373

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYQDLREFVRALEKNNELKRIKVEVDPILEITEFADRAVKQGGPALLFENPKGYKIPVL
CCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHH
INSFASMRKMELALEVKSVEEVAQRIVEFLEMRMPEGLIGKLKMLPKLAEMGAFFPKIVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
KGPCQEVVKTDGFSLLDFPVLQCWPDDGGRYITLPLVFSRNPETGKRNCGMYRMQVYDER
CCCHHHHHHCCCCCEECCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCH
TAGMHWQTHKQGAEHARRMQHQGKKRMDVAVAIGADPATMYSAILPLPPDLDEMMISGFL
HCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHC
RGSPVEMVKCQTCDLEVPANAEIVLEGYVELGELRTEGPFGDHTGFYSLADEYPVFHVTC
CCCCCCEEEEEECCEECCCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHCCCCCEEEEEE
VTHRKDPIYVTTIVGPPPMEDYYMGKAIERIFLPLMRMQLPEVRDISMPAEGIFHNLILV
EEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHE
SIRKSYPGHARKVMHSIWGTGQAMFSKVIVVVDEDVDVQNYSEVAWKAFNNIDPERDIQF
EECCCCCHHHHHHHHHHHCCCHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEE
VMGPVDSLDHASRLVNYGSKMGVDATRKWPGEGFTRPWPDVITMDSEVKRRVDDLWKKAG
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure 
AYQDLREFVRALEKNNELKRIKVEVDPILEITEFADRAVKQGGPALLFENPKGYKIPVL
CHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEECCCCCEEHHH
INSFASMRKMELALEVKSVEEVAQRIVEFLEMRMPEGLIGKLKMLPKLAEMGAFFPKIVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
KGPCQEVVKTDGFSLLDFPVLQCWPDDGGRYITLPLVFSRNPETGKRNCGMYRMQVYDER
CCCHHHHHHCCCCCEECCCEEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEECCH
TAGMHWQTHKQGAEHARRMQHQGKKRMDVAVAIGADPATMYSAILPLPPDLDEMMISGFL
HCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHC
RGSPVEMVKCQTCDLEVPANAEIVLEGYVELGELRTEGPFGDHTGFYSLADEYPVFHVTC
CCCCCCEEEEEECCEECCCCCEEEEECHHHHHHHCCCCCCCCCCCCCHHCCCCCEEEEEE
VTHRKDPIYVTTIVGPPPMEDYYMGKAIERIFLPLMRMQLPEVRDISMPAEGIFHNLILV
EEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHE
SIRKSYPGHARKVMHSIWGTGQAMFSKVIVVVDEDVDVQNYSEVAWKAFNNIDPERDIQF
EECCCCCHHHHHHHHHHHCCCHHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEE
VMGPVDSLDHASRLVNYGSKMGVDATRKWPGEGFTRPWPDVITMDSEVKRRVDDLWKKAG
EECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]