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The map label for this gene is ybdK [C]

Identifier: 116623022

GI number: 116623022

Start: 4962867

End: 4964024

Strand: Reverse

Name: ybdK [C]

Synonym: Acid_3926

Alternate gene names: 116623022

Gene position: 4964024-4962867 (Counterclockwise)

Preceding gene: 116623023

Following gene: 116623021

Centisome position: 49.81

GC content: 59.33

Gene sequence:

>1158_bases
ATGAGCCTGATGTCCTCCGTCAGACCGAGCCTGAGTATCGGCATCGAGGAAGAGTACCAGACCGTCGATCCCGTGACGCG
CGATCTGCGTTCCCACATTCATGCCGAGATTGTGCAAAAGGGCAAGCTGCTCCTGGCCGAGCGCGTCAAGCCGGAAATGC
ACCAGTCCGTGGTCGAGATCGGTACCGGTGTCTGCCAGAACATCCAGGAAGCCAAGGACGAAATCCGCGATATCCGGCAG
CAAATTATCCGCCTCGCGCGCCAGAACGATCTCCGCCTCGCCGCCGGCGGCACCCATCCCTTCGCCCAGTGGCGCGAGCA
GGAAATCTACCCGGACGATCGCTATCGCACCATCGTCGAAGATCTCAAAATGGTCGCGCGCGCCAACCTGATTTTCGGAC
TCCACGTCCACATCGGCGTGGAAGATCGCGAGACCGCCATTCAGCTGATGAACAGCGCCCGCTACTTCCTGCCGCACCTG
CTGGCGCTTTCCGCCAACTCGCCCTTCTGGGTCGGCATGGAGACCGGGCTGCGCTCCTACCGCTGCAAGGTCTTCGACAA
ATTTCCGCGCACCAATATCCCTGATCTCTACCAGAGCTGGTCGGAATTCGAAAACTACGTCAATCTGCTCATCCACACCA
ACTGCATCGATAACGCCAAGAAGATCTGGTGGGACATCCGCCCCCACCCATACTTCCCCACCCTCGAATTCCGCATCTGC
GATATGCCCATGCGGCTGGAGGAAACCATCGCGATCGCCGCGCTGTGCCAGGCCATCATCGCCAAGCTCTATCGCATTCA
CGAGCAGAACCTCACCTTCCGCCACTACAGCCGCTCGCTCATCATGGAAAATAAGTGGCGTGCCGCGCGCTATGGCCTCG
ATGGCAAGATGATCGATTTCGGCAAGCAGACCGAAGTGCCCGCGCGCCAGTTGATCGAAGAAATCCTCGAATTCGTCAGC
GACGTCGTGCCCGAACTCGGCAGCCGGGAAGAGATCGCCTACATCCGCCGTATCATGGAGCATGGCAACGGCGCCGACCG
CCAGCTGCGCGTCTTTCATGAGACCGGAGACCTGAAGAAAGTAGTGGACTACATGATCGAAGAAACCGAATACGGTCTTT
TTGCCCCCGCTTTCACGGCGGCGGGAGAGGGCCAATGA

Upstream 100 bases:

>100_bases
TCCTCGAGGCCGTCGCCGACATGGCGATCTCCCGCGCGCTTCAGCCCGCCTCCCTCCCGCAGTACCATTGGTCGAAATTT
CTCTCCGGAGTAACCGCGCC

Downstream 100 bases:

>100_bases
TCGAAACCAAGACCCTGCTGCGCGAGACCCCGTTCGACCCGGAATTCCTGCCCGGTGCGCGCAATGCCCTGGTGAGCTGC
CTCCGCATCCAGCCCGAAGA

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MSLMSSVRPSLSIGIEEEYQTVDPVTRDLRSHIHAEIVQKGKLLLAERVKPEMHQSVVEIGTGVCQNIQEAKDEIRDIRQ
QIIRLARQNDLRLAAGGTHPFAQWREQEIYPDDRYRTIVEDLKMVARANLIFGLHVHIGVEDRETAIQLMNSARYFLPHL
LALSANSPFWVGMETGLRSYRCKVFDKFPRTNIPDLYQSWSEFENYVNLLIHTNCIDNAKKIWWDIRPHPYFPTLEFRIC
DMPMRLEETIAIAALCQAIIAKLYRIHEQNLTFRHYSRSLIMENKWRAARYGLDGKMIDFGKQTEVPARQLIEEILEFVS
DVVPELGSREEIAYIRRIMEHGNGADRQLRVFHETGDLKKVVDYMIEETEYGLFAPAFTAAGEGQ

Sequences:

>Translated_385_residues
MSLMSSVRPSLSIGIEEEYQTVDPVTRDLRSHIHAEIVQKGKLLLAERVKPEMHQSVVEIGTGVCQNIQEAKDEIRDIRQ
QIIRLARQNDLRLAAGGTHPFAQWREQEIYPDDRYRTIVEDLKMVARANLIFGLHVHIGVEDRETAIQLMNSARYFLPHL
LALSANSPFWVGMETGLRSYRCKVFDKFPRTNIPDLYQSWSEFENYVNLLIHTNCIDNAKKIWWDIRPHPYFPTLEFRIC
DMPMRLEETIAIAALCQAIIAKLYRIHEQNLTFRHYSRSLIMENKWRAARYGLDGKMIDFGKQTEVPARQLIEEILEFVS
DVVPELGSREEIAYIRRIMEHGNGADRQLRVFHETGDLKKVVDYMIEETEYGLFAPAFTAAGEGQ
>Mature_384_residues
SLMSSVRPSLSIGIEEEYQTVDPVTRDLRSHIHAEIVQKGKLLLAERVKPEMHQSVVEIGTGVCQNIQEAKDEIRDIRQQ
IIRLARQNDLRLAAGGTHPFAQWREQEIYPDDRYRTIVEDLKMVARANLIFGLHVHIGVEDRETAIQLMNSARYFLPHLL
ALSANSPFWVGMETGLRSYRCKVFDKFPRTNIPDLYQSWSEFENYVNLLIHTNCIDNAKKIWWDIRPHPYFPTLEFRICD
MPMRLEETIAIAALCQAIIAKLYRIHEQNLTFRHYSRSLIMENKWRAARYGLDGKMIDFGKQTEVPARQLIEEILEFVSD
VVPELGSREEIAYIRRIMEHGNGADRQLRVFHETGDLKKVVDYMIEETEYGLFAPAFTAAGEGQ

Specific function: ATP-dependent carboxylate-amine ligase

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family

Homologues:

Organism=Escherichia coli, GI1786795, Length=352, Percent_Identity=30.1136363636364, Blast_Score=191, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CAAL_SOLUE (Q01ZM2)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_825178.1
- ProteinModelPortal:   Q01ZM2
- SMR:   Q01ZM2
- STRING:   Q01ZM2
- GeneID:   4428709
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_3926
- NMPDR:   fig|234267.9.peg.3731
- eggNOG:   COG2170
- HOGENOM:   HBG564677
- OMA:   NWQEFAG
- PhylomeDB:   Q01ZM2
- ProtClustDB:   PRK13515
- HAMAP:   MF_01609
- InterPro:   IPR011793
- InterPro:   IPR006336
- TIGRFAMs:   TIGR02050

Pfam domain/function: PF04107 GCS2

EC number: NA

Molecular weight: Translated: 44691; Mature: 44560

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMSSVRPSLSIGIEEEYQTVDPVTRDLRSHIHAEIVQKGKLLLAERVKPEMHQSVVEI
CCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHH
GTGVCQNIQEAKDEIRDIRQQIIRLARQNDLRLAAGGTHPFAQWREQEIYPDDRYRTIVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHH
DLKMVARANLIFGLHVHIGVEDRETAIQLMNSARYFLPHLLALSANSPFWVGMETGLRSY
HHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCHHHH
RCKVFDKFPRTNIPDLYQSWSEFENYVNLLIHTNCIDNAKKIWWDIRPHPYFPTLEFRIC
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHEEECCCCCCCCCEEEEEE
DMPMRLEETIAIAALCQAIIAKLYRIHEQNLTFRHYSRSLIMENKWRAARYGLDGKMIDF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCEECC
GKQTEVPARQLIEEILEFVSDVVPELGSREEIAYIRRIMEHGNGADRQLRVFHETGDLKK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCHHH
VVDYMIEETEYGLFAPAFTAAGEGQ
HHHHHHHHCCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
SLMSSVRPSLSIGIEEEYQTVDPVTRDLRSHIHAEIVQKGKLLLAERVKPEMHQSVVEI
CCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHH
GTGVCQNIQEAKDEIRDIRQQIIRLARQNDLRLAAGGTHPFAQWREQEIYPDDRYRTIVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHHHHH
DLKMVARANLIFGLHVHIGVEDRETAIQLMNSARYFLPHLLALSANSPFWVGMETGLRSY
HHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHCHHHH
RCKVFDKFPRTNIPDLYQSWSEFENYVNLLIHTNCIDNAKKIWWDIRPHPYFPTLEFRIC
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCHHHEEECCCCCCCCCEEEEEE
DMPMRLEETIAIAALCQAIIAKLYRIHEQNLTFRHYSRSLIMENKWRAARYGLDGKMIDF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHCCCCCEECC
GKQTEVPARQLIEEILEFVSDVVPELGSREEIAYIRRIMEHGNGADRQLRVFHETGDLKK
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEHHCCCHHH
VVDYMIEETEYGLFAPAFTAAGEGQ
HHHHHHHHCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA