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The map label for this gene is yrbE [H]

Identifier: 116622898

GI number: 116622898

Start: 4823996

End: 4825315

Strand: Reverse

Name: yrbE [H]

Synonym: Acid_3799

Alternate gene names: 116622898

Gene position: 4825315-4823996 (Counterclockwise)

Preceding gene: 116622900

Following gene: 116622896

Centisome position: 48.42

GC content: 62.95

Gene sequence:

>1320_bases
ATGAACCGTCGGCAGTTTTTCCAGACCGGATTGGCGGGCGCGGCGTTTTCCGCGCTTGGGTATGCGCAGCAGAAACCGAG
GCGCGTGGGGCTGATCGGCTGCGGATGGTACGGCAAGGTAGACATCCTGCGGCTCATCCAGGTGGCGCCGGTGGAAGTGG
TCTCGCTGTGCGACGTGGATTCGAAGATGCTGAGCGACGCGGCGGACATCATCGCATCGCGGCAGGCGTCGAAGAAGAAG
CCCCGGCTGTTCCGTGACTATCGCGAGATGCTTCGCGAGAAGGATCTCGACATCGTGGAGGTGGCGACGCCCGACCACTG
GCATGCGCTGACGGCCATCGCGGCGATGCAGGCGGGCGCGGACGTCTATTGCCAGAAGCCGATCAGCGTGGATGTGGCGG
AGGGCAAGGCGATGCTGGCGGCGGCCCGAAAATACGGCCGTGTGGTGCAGATCGGCACGCAGCGGCGCAGCACGCCGCAC
CTGATCGAGGCGCGTGAGCAGATTGTGCGCGCGGGGAAATTGGGGAAGGTCGGGCTGGTAGAAATCTACTCGTATTCGAA
CTCGCGGCCTCGCACCGATCCGGACACGGTGCCGCCCCCGAACCTGGATTACGAGATGTGGACCGGTCCGGCGCCGATGC
GTCCGTTTCATCCGATGATGCACCCGCGGAGCTGGCGGCAATTCATGGAGTATGGCAACGGCACTATCGGCGACATGGGC
GTGCACATGCTGGATATGACGCGGTGGATGCTCGGGCTGGGCTGGCCGAAGCGTGTGTCCTCGACCGGCGGGATTCTGGT
GAACACGACAGGGAAGGCCAATATTCCGGATACACAGACCGCGATCTTCGAGTACGACGATTTGCGGGTGGTGTGGCAGC
ATCGTTTGTGGGGGCAGCCGCCGGATCCGAAATATACGTGGGGAGCGACGTTCTATGGCGACCAGGGGACGTTGAAGGCG
AGCGTCTTCCGGTATGACTATGCGCCGGCGAAGGGCGAGCCGGTGCATCGGGACGTGACGTACGAGCTGGATAAATTCCC
GGAGGACGATACCGAGGTCGGAATTGAGAAGCACGTAGCGCCGGCGATCCGGTATCACATGAAGAATTTTCTGACAGCGA
TCGATCAGCGGTCGAAGCCGGTGGCGGACATCGAGGAAGGCTATATTTCGTCGTCGTGCTGCATCCTGGGGAATATGGCG
CTGAAGCTGGGGCGCACGATCCAGTGGGATGCGGCGAAGCAGCAGGCGATCGGGGACGAGGAGGCTAACGGGATGCTGCG
GAGGGCGTATCGTGCTCCGTGGGTGCATCCGGCGGGGTAA

Upstream 100 bases:

>100_bases
CGCTGCTGGCGAACGCGCTGACGGCGCTCGAGGGTTTCGAACTGGTAGACGACAGCCTCGGCATCCATATCGTGTTCCCG
CGCGGCTGGTAAGCTGAGCT

Downstream 100 bases:

>100_bases
CTTTGTTTCTCGCAGAGGCGCAGAGCCGCAGAGTCACGCAGAGAAAACCAATGCAAAACTCCTAAGGCTTTATCTTCTTG
GCGTGACTCTGCGGCTCCGC

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MNRRQFFQTGLAGAAFSALGYAQQKPRRVGLIGCGWYGKVDILRLIQVAPVEVVSLCDVDSKMLSDAADIIASRQASKKK
PRLFRDYREMLREKDLDIVEVATPDHWHALTAIAAMQAGADVYCQKPISVDVAEGKAMLAAARKYGRVVQIGTQRRSTPH
LIEAREQIVRAGKLGKVGLVEIYSYSNSRPRTDPDTVPPPNLDYEMWTGPAPMRPFHPMMHPRSWRQFMEYGNGTIGDMG
VHMLDMTRWMLGLGWPKRVSSTGGILVNTTGKANIPDTQTAIFEYDDLRVVWQHRLWGQPPDPKYTWGATFYGDQGTLKA
SVFRYDYAPAKGEPVHRDVTYELDKFPEDDTEVGIEKHVAPAIRYHMKNFLTAIDQRSKPVADIEEGYISSSCCILGNMA
LKLGRTIQWDAAKQQAIGDEEANGMLRRAYRAPWVHPAG

Sequences:

>Translated_439_residues
MNRRQFFQTGLAGAAFSALGYAQQKPRRVGLIGCGWYGKVDILRLIQVAPVEVVSLCDVDSKMLSDAADIIASRQASKKK
PRLFRDYREMLREKDLDIVEVATPDHWHALTAIAAMQAGADVYCQKPISVDVAEGKAMLAAARKYGRVVQIGTQRRSTPH
LIEAREQIVRAGKLGKVGLVEIYSYSNSRPRTDPDTVPPPNLDYEMWTGPAPMRPFHPMMHPRSWRQFMEYGNGTIGDMG
VHMLDMTRWMLGLGWPKRVSSTGGILVNTTGKANIPDTQTAIFEYDDLRVVWQHRLWGQPPDPKYTWGATFYGDQGTLKA
SVFRYDYAPAKGEPVHRDVTYELDKFPEDDTEVGIEKHVAPAIRYHMKNFLTAIDQRSKPVADIEEGYISSSCCILGNMA
LKLGRTIQWDAAKQQAIGDEEANGMLRRAYRAPWVHPAG
>Mature_439_residues
MNRRQFFQTGLAGAAFSALGYAQQKPRRVGLIGCGWYGKVDILRLIQVAPVEVVSLCDVDSKMLSDAADIIASRQASKKK
PRLFRDYREMLREKDLDIVEVATPDHWHALTAIAAMQAGADVYCQKPISVDVAEGKAMLAAARKYGRVVQIGTQRRSTPH
LIEAREQIVRAGKLGKVGLVEIYSYSNSRPRTDPDTVPPPNLDYEMWTGPAPMRPFHPMMHPRSWRQFMEYGNGTIGDMG
VHMLDMTRWMLGLGWPKRVSSTGGILVNTTGKANIPDTQTAIFEYDDLRVVWQHRLWGQPPDPKYTWGATFYGDQGTLKA
SVFRYDYAPAKGEPVHRDVTYELDKFPEDDTEVGIEKHVAPAIRYHMKNFLTAIDQRSKPVADIEEGYISSSCCILGNMA
LKLGRTIQWDAAKQQAIGDEEANGMLRRAYRAPWVHPAG

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 49284; Mature: 49284

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRQFFQTGLAGAAFSALGYAQQKPRRVGLIGCGWYGKVDILRLIQVAPVEVVSLCDVD
CCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCH
SKMLSDAADIIASRQASKKKPRLFRDYREMLREKDLDIVEVATPDHWHALTAIAAMQAGA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
DVYCQKPISVDVAEGKAMLAAARKYGRVVQIGTQRRSTPHLIEAREQIVRAGKLGKVGLV
CEEECCCCEEECCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
EIYSYSNSRPRTDPDTVPPPNLDYEMWTGPAPMRPFHPMMHPRSWRQFMEYGNGTIGDMG
EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHH
VHMLDMTRWMLGLGWPKRVSSTGGILVNTTGKANIPDTQTAIFEYDDLRVVWQHRLWGQP
HHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCC
PDPKYTWGATFYGDQGTLKASVFRYDYAPAKGEPVHRDVTYELDKFPEDDTEVGIEKHVA
CCCCEEECEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHCCHHHHHH
PAIRYHMKNFLTAIDQRSKPVADIEEGYISSSCCILGNMALKLGRTIQWDAAKQQAIGDE
HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCEEEECCHHHHHCCCH
EANGMLRRAYRAPWVHPAG
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNRRQFFQTGLAGAAFSALGYAQQKPRRVGLIGCGWYGKVDILRLIQVAPVEVVSLCDVD
CCHHHHHHHCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCH
SKMLSDAADIIASRQASKKKPRLFRDYREMLREKDLDIVEVATPDHWHALTAIAAMQAGA
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
DVYCQKPISVDVAEGKAMLAAARKYGRVVQIGTQRRSTPHLIEAREQIVRAGKLGKVGLV
CEEECCCCEEECCCCHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
EIYSYSNSRPRTDPDTVPPPNLDYEMWTGPAPMRPFHPMMHPRSWRQFMEYGNGTIGDMG
EEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHH
VHMLDMTRWMLGLGWPKRVSSTGGILVNTTGKANIPDTQTAIFEYDDLRVVWQHRLWGQP
HHHHHHHHHHHHCCCHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCHHHHHHHHHCCCC
PDPKYTWGATFYGDQGTLKASVFRYDYAPAKGEPVHRDVTYELDKFPEDDTEVGIEKHVA
CCCCEEECEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHCCCCCCHHCCHHHHHH
PAIRYHMKNFLTAIDQRSKPVADIEEGYISSSCCILGNMALKLGRTIQWDAAKQQAIGDE
HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCEEEECCHHHHHCCCH
EANGMLRRAYRAPWVHPAG
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]