Click here to switch to the map view.

The map label for this gene is yagR [H]

Identifier: 116622751

GI number: 116622751

Start: 4626674

End: 4628881

Strand: Direct

Name: yagR [H]

Synonym: Acid_3650

Alternate gene names: 116622751

Gene position: 4626674-4628881 (Clockwise)

Preceding gene: 116622750

Following gene: 116622753

Centisome position: 46.43

GC content: 65.62

Gene sequence:

>2208_bases
ATGCAGAATTCGATCGGACAACCAATTCAGCGCGTGGAAGGCCGCGCCAAGGTCACCGGCAAAGCGACGTACTCCGCCGA
GCACAAAGTGCCGAACCTCGCCTATGCCGTAATGGTTACCAGCACCATCGCGAAGGGCCGCGTCATCAGCATCGATACGG
CCGTCGCGCAGCGCGCTCCGGGCGTGCTCGCCATCCTCACCGCGCAGAACGCGCCGAAGTACCCGAAAAAGCAAAAGAGC
CGGCCCACCGATCGCGACGTGCAATACCTGCAGGACAACCAGGTGCGCTATGCCAACCAGCCCGTCGCGGTGGTTGTCGC
TGAAACCTGGGAAGGCGCGCGGCAGGCGGCGCAAGACGTGGTGGTGCATTACGCAGTGGAACGGCACTCGGTGGAACTGG
AGCCCAACGCGGCAGCCGCCTACAAGCCCGAAAAGGGCGGCGCGCACAACGAACCTACCGACGAGTCGCGCGGAGACATC
GCATCGCTTGCGACTGCCGAAGTCAAGGTTGACCACGTCTACACTACCCAGTTTCAGGTGCACAACCCGATGGAGCCGCA
CGCCACCATTGCGGTATGGGAGAGTCCGGATAAACTCACGCTCTACGACGCCACGCAGGGTCCGTTCAGCGATCGCGAGC
GCGTAGCCGAGCTCCTCGGTCTCGCGCCTGATAACATACGCGTGATCGATCCCTTCCTCGGCGGTGGCTTCGGCAGCAAG
GGGCCGACCTGGTCGCATGTGGTGCTGGCGGCAATGGCGGCGCAGCGCGTCAACCGGCCGGTGAAGCTGGTGGTGGAGCG
GCCGCAGATGTTCGGGCCGGTTGGCTTCCGCTCCCACACGCGGCAGACCGTTGCGGCCGGCGCCAACAAAGATGGAACTC
TCGTCGCGCTGCGCCACGACACGGTCGCGCAGACTTCGAGCTTCGACGAGTTTCTGGAATCCGCCGGGATGGCGGCGCGT
ATGTTGTATACCTCGCCCGCCAACGCCTCCCGTCACCGCCTGGTGCGAACCGACATCGGCACTCCCTCTTTCACGCGGGC
GCCGGGATGGGCGGCCGGCACCAACGTGCTCGAGGTCGCGATCGATGAGATGGCGTATGCGCTCAAGATGGATCCGCTGG
AATTCCGGCTGAAGAATTACGCCGAGCAGGATCCCGAAATGCAGCGGCCCTGGTCCAGTAAGTCACTGCGCGAGTGCTAC
CGTTTGGGCGCGGAGCGCTTCGGTTGGAGCCGCCGGCAATGGGAGCCGCGCTCGATGCGCGAGGGCAACAGCCTGGTGGG
CTGGGGCATGGCATCGTCGGCGTATCCCGTGCATCGCACCGCTGCGGCGGCGCGCGCCCGCGTTCACCCCGATGGCTCGA
TCCTGGTCGAGAGCGGCACACAGGATCTGGGCACCGGCACGTATACCGTGATGACGCAGGTGGCGGCGGACGCGATCGGC
GTGCCGGCATCGCAGGTGACTTTCCGCCTGGGCGATACGCAGGAAGCCGAAGCTCCCGTCGCGGCCGGATCGCAGACGGC
GACGAGTGTGGGGTCGGCGGTTAACGCGGCGGGCAGTGCGCTTCGCGAGAAGCTGGCGCAATTGGCGATCTCCGACAGCA
GCTCGCCGCTGCATGGAGCGGCGTTGCAGGACGTTGTGCTGCGCGGTGGTGCGCTGCAGGTACGCGGCGCGGAGTCGCGC
ACGGAGAGCCTGGCGACGCTGTTCGCGCGCCACGGGCAGAGCTCGCTCGAGGCGGAGGCAGGGGCCAAGCCCGGCAGCGA
GCAGGATCAATATTCGATGTACACTTTCGGCGCGCAGTTCGCCGAGGTGCGGGTGGACGCCGCGCTCGGACAGATGCGAG
TCTCGCGGATGGTCGGCGTGTTCGGCGCGGGCCGCATATTAAACCCGCGGACAGCGCGCAGCCAGTTCATGGGCGGCATG
GTCTGGGGCATCGGCTTCGCGCTCTACGAGAACGCCGTCATGGACCCGCGCCTCGGCAGGTTCGTCAACAACAATCTGGC
GGAGTATCACATTCCCGTGAATGCGGACGTGCCGGCGCTCGAGGCGTTGTGGGTGGACGAGAAGGACACTCACGTAAATC
CGCTTGGCGTCAAAGGCATCGGCGAGATCGGAATCACGGGAGCCGCGGCGGCCATCAACAATGCGGTATTTCATGCCACG
GGCAAGCGCATTCGCGATTACCCGATCACGCTCGATCAAGTGCTCTAG

Upstream 100 bases:

>100_bases
GCTCAGCCCTATCGCGATAACCGGTTCAAAGTGGAATTGGCGCGACGCGCTGTGGTTCGCGCGCTCCAGACCACGGCGGC
CCTGACTTGAGGATCACGCG

Downstream 100 bases:

>100_bases
GCGAAGCCGCTTATCCGCGGCCCAAAAGCCTTTACTCTCCCTTGGGAAACGCCTTCATGTGCAGGATCGAGTTCACCAGC
ATGTTGAACTCTCCCAGGTT

Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MQNSIGQPIQRVEGRAKVTGKATYSAEHKVPNLAYAVMVTSTIAKGRVISIDTAVAQRAPGVLAILTAQNAPKYPKKQKS
RPTDRDVQYLQDNQVRYANQPVAVVVAETWEGARQAAQDVVVHYAVERHSVELEPNAAAAYKPEKGGAHNEPTDESRGDI
ASLATAEVKVDHVYTTQFQVHNPMEPHATIAVWESPDKLTLYDATQGPFSDRERVAELLGLAPDNIRVIDPFLGGGFGSK
GPTWSHVVLAAMAAQRVNRPVKLVVERPQMFGPVGFRSHTRQTVAAGANKDGTLVALRHDTVAQTSSFDEFLESAGMAAR
MLYTSPANASRHRLVRTDIGTPSFTRAPGWAAGTNVLEVAIDEMAYALKMDPLEFRLKNYAEQDPEMQRPWSSKSLRECY
RLGAERFGWSRRQWEPRSMREGNSLVGWGMASSAYPVHRTAAAARARVHPDGSILVESGTQDLGTGTYTVMTQVAADAIG
VPASQVTFRLGDTQEAEAPVAAGSQTATSVGSAVNAAGSALREKLAQLAISDSSSPLHGAALQDVVLRGGALQVRGAESR
TESLATLFARHGQSSLEAEAGAKPGSEQDQYSMYTFGAQFAEVRVDAALGQMRVSRMVGVFGAGRILNPRTARSQFMGGM
VWGIGFALYENAVMDPRLGRFVNNNLAEYHIPVNADVPALEALWVDEKDTHVNPLGVKGIGEIGITGAAAAINNAVFHAT
GKRIRDYPITLDQVL

Sequences:

>Translated_735_residues
MQNSIGQPIQRVEGRAKVTGKATYSAEHKVPNLAYAVMVTSTIAKGRVISIDTAVAQRAPGVLAILTAQNAPKYPKKQKS
RPTDRDVQYLQDNQVRYANQPVAVVVAETWEGARQAAQDVVVHYAVERHSVELEPNAAAAYKPEKGGAHNEPTDESRGDI
ASLATAEVKVDHVYTTQFQVHNPMEPHATIAVWESPDKLTLYDATQGPFSDRERVAELLGLAPDNIRVIDPFLGGGFGSK
GPTWSHVVLAAMAAQRVNRPVKLVVERPQMFGPVGFRSHTRQTVAAGANKDGTLVALRHDTVAQTSSFDEFLESAGMAAR
MLYTSPANASRHRLVRTDIGTPSFTRAPGWAAGTNVLEVAIDEMAYALKMDPLEFRLKNYAEQDPEMQRPWSSKSLRECY
RLGAERFGWSRRQWEPRSMREGNSLVGWGMASSAYPVHRTAAAARARVHPDGSILVESGTQDLGTGTYTVMTQVAADAIG
VPASQVTFRLGDTQEAEAPVAAGSQTATSVGSAVNAAGSALREKLAQLAISDSSSPLHGAALQDVVLRGGALQVRGAESR
TESLATLFARHGQSSLEAEAGAKPGSEQDQYSMYTFGAQFAEVRVDAALGQMRVSRMVGVFGAGRILNPRTARSQFMGGM
VWGIGFALYENAVMDPRLGRFVNNNLAEYHIPVNADVPALEALWVDEKDTHVNPLGVKGIGEIGITGAAAAINNAVFHAT
GKRIRDYPITLDQVL
>Mature_735_residues
MQNSIGQPIQRVEGRAKVTGKATYSAEHKVPNLAYAVMVTSTIAKGRVISIDTAVAQRAPGVLAILTAQNAPKYPKKQKS
RPTDRDVQYLQDNQVRYANQPVAVVVAETWEGARQAAQDVVVHYAVERHSVELEPNAAAAYKPEKGGAHNEPTDESRGDI
ASLATAEVKVDHVYTTQFQVHNPMEPHATIAVWESPDKLTLYDATQGPFSDRERVAELLGLAPDNIRVIDPFLGGGFGSK
GPTWSHVVLAAMAAQRVNRPVKLVVERPQMFGPVGFRSHTRQTVAAGANKDGTLVALRHDTVAQTSSFDEFLESAGMAAR
MLYTSPANASRHRLVRTDIGTPSFTRAPGWAAGTNVLEVAIDEMAYALKMDPLEFRLKNYAEQDPEMQRPWSSKSLRECY
RLGAERFGWSRRQWEPRSMREGNSLVGWGMASSAYPVHRTAAAARARVHPDGSILVESGTQDLGTGTYTVMTQVAADAIG
VPASQVTFRLGDTQEAEAPVAAGSQTATSVGSAVNAAGSALREKLAQLAISDSSSPLHGAALQDVVLRGGALQVRGAESR
TESLATLFARHGQSSLEAEAGAKPGSEQDQYSMYTFGAQFAEVRVDAALGQMRVSRMVGVFGAGRILNPRTARSQFMGGM
VWGIGFALYENAVMDPRLGRFVNNNLAEYHIPVNADVPALEALWVDEKDTHVNPLGVKGIGEIGITGAAAAINNAVFHAT
GKRIRDYPITLDQVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI71773480, Length=761, Percent_Identity=26.0183968462549, Blast_Score=156, Evalue=6e-38,
Organism=Homo sapiens, GI91823271, Length=705, Percent_Identity=25.6737588652482, Blast_Score=145, Evalue=1e-34,
Organism=Escherichia coli, GI1786478, Length=741, Percent_Identity=39.136302294197, Blast_Score=436, Evalue=1e-123,
Organism=Escherichia coli, GI1789230, Length=756, Percent_Identity=30.8201058201058, Blast_Score=284, Evalue=2e-77,
Organism=Escherichia coli, GI1789246, Length=795, Percent_Identity=26.6666666666667, Blast_Score=185, Evalue=7e-48,
Organism=Caenorhabditis elegans, GI17540638, Length=714, Percent_Identity=23.5294117647059, Blast_Score=136, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI17539860, Length=753, Percent_Identity=21.5139442231076, Blast_Score=105, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32566215, Length=744, Percent_Identity=21.505376344086, Blast_Score=103, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24647195, Length=734, Percent_Identity=25.6130790190736, Blast_Score=173, Evalue=3e-43,
Organism=Drosophila melanogaster, GI24647199, Length=707, Percent_Identity=25.8840169731259, Blast_Score=171, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24647197, Length=755, Percent_Identity=24.9006622516556, Blast_Score=162, Evalue=1e-39,
Organism=Drosophila melanogaster, GI24647201, Length=714, Percent_Identity=25.0700280112045, Blast_Score=144, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24647193, Length=700, Percent_Identity=25.1428571428571, Blast_Score=140, Evalue=3e-33,
Organism=Drosophila melanogaster, GI17737937, Length=703, Percent_Identity=23.8975817923186, Blast_Score=120, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 79196; Mature: 79196

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNSIGQPIQRVEGRAKVTGKATYSAEHKVPNLAYAVMVTSTIAKGRVISIDTAVAQRAP
CCCCCCCHHHHHCCCEEEEECEEECCCCCCCCCEEHHHHHHHHCCCCEEEEEHHHHHCCC
GVLAILTAQNAPKYPKKQKSRPTDRDVQYLQDNQVRYANQPVAVVVAETWEGARQAAQDV
CEEEEEEECCCCCCCCHHCCCCCCHHHHHHHCCCEEECCCCEEEEEECCHHHHHHHHHHH
VVHYAVERHSVELEPNAAAAYKPEKGGAHNEPTDESRGDIASLATAEVKVDHVYTTQFQV
HHHEEEHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEEEEEEEEEE
HNPMEPHATIAVWESPDKLTLYDATQGPFSDRERVAELLGLAPDNIRVIDPFLGGGFGSK
CCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEECHHHCCCCCCC
GPTWSHVVLAAMAAQRVNRPVKLVVERPQMFGPVGFRSHTRQTVAAGANKDGTLVALRHD
CCCHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCHHCHHHHHCCCCCCCCEEEEECC
TVAQTSSFDEFLESAGMAARMLYTSPANASRHRLVRTDIGTPSFTRAPGWAAGTNVLEVA
CHHHHCCHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH
IDEMAYALKMDPLEFRLKNYAEQDPEMQRPWSSKSLRECYRLGAERFGWSRRQWEPRSMR
HHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
EGNSLVGWGMASSAYPVHRTAAAARARVHPDGSILVESGTQDLGTGTYTVMTQVAADAIG
CCCCEEEECCCCCCCCHHHHHHHHHCEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
VPASQVTFRLGDTQEAEAPVAAGSQTATSVGSAVNAAGSALREKLAQLAISDSSSPLHGA
CCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ALQDVVLRGGALQVRGAESRTESLATLFARHGQSSLEAEAGAKPGSEQDQYSMYTFGAQF
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCHH
AEVRVDAALGQMRVSRMVGVFGAGRILNPRTARSQFMGGMVWGIGFALYENAVMDPRLGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
FVNNNLAEYHIPVNADVPALEALWVDEKDTHVNPLGVKGIGEIGITGAAAAINNAVFHAT
HHCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEC
GKRIRDYPITLDQVL
CCCCCCCCCCHHHCC
>Mature Secondary Structure
MQNSIGQPIQRVEGRAKVTGKATYSAEHKVPNLAYAVMVTSTIAKGRVISIDTAVAQRAP
CCCCCCCHHHHHCCCEEEEECEEECCCCCCCCCEEHHHHHHHHCCCCEEEEEHHHHHCCC
GVLAILTAQNAPKYPKKQKSRPTDRDVQYLQDNQVRYANQPVAVVVAETWEGARQAAQDV
CEEEEEEECCCCCCCCHHCCCCCCHHHHHHHCCCEEECCCCEEEEEECCHHHHHHHHHHH
VVHYAVERHSVELEPNAAAAYKPEKGGAHNEPTDESRGDIASLATAEVKVDHVYTTQFQV
HHHEEEHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEEEEEEEEEEEEEEEE
HNPMEPHATIAVWESPDKLTLYDATQGPFSDRERVAELLGLAPDNIRVIDPFLGGGFGSK
CCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEECHHHCCCCCCC
GPTWSHVVLAAMAAQRVNRPVKLVVERPQMFGPVGFRSHTRQTVAAGANKDGTLVALRHD
CCCHHHHHHHHHHHHHCCCCEEEEEECCHHCCCCCCCHHCHHHHHCCCCCCCCEEEEECC
TVAQTSSFDEFLESAGMAARMLYTSPANASRHRLVRTDIGTPSFTRAPGWAAGTNVLEVA
CHHHHCCHHHHHHHCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH
IDEMAYALKMDPLEFRLKNYAEQDPEMQRPWSSKSLRECYRLGAERFGWSRRQWEPRSMR
HHHHHHHHCCCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHH
EGNSLVGWGMASSAYPVHRTAAAARARVHPDGSILVESGTQDLGTGTYTVMTQVAADAIG
CCCCEEEECCCCCCCCHHHHHHHHHCEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHC
VPASQVTFRLGDTQEAEAPVAAGSQTATSVGSAVNAAGSALREKLAQLAISDSSSPLHGA
CCHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
ALQDVVLRGGALQVRGAESRTESLATLFARHGQSSLEAEAGAKPGSEQDQYSMYTFGAQF
HHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCEEEEECCCHH
AEVRVDAALGQMRVSRMVGVFGAGRILNPRTARSQFMGGMVWGIGFALYENAVMDPRLGR
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
FVNNNLAEYHIPVNADVPALEALWVDEKDTHVNPLGVKGIGEIGITGAAAAINNAVFHAT
HHCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEC
GKRIRDYPITLDQVL
CCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]